Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq19 120 2e-22 >seq19 Length=2240402 Score = 120 bits (132), Expect = 2e-22 Identities = 142/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||||| ||| || || |||||||| |||||||| || | | | |||| | || Sbjct 941636 CAACACCAAGTGGAGAGTAGATTCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATC 941577 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||| ||| || || |||||||||||||||||||| |||| ||| | ||||||||| || Sbjct 941576 TTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC 941517 Query 44245 CGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 || || ||||| || | || | || || || | ||||||||||||| || |||| Sbjct 941516 TTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCG 941458 Query 44304 TCTTTCCCGT 44313 | ||||| || Sbjct 941457 TTTTTCCGGT 941448 Score = 118 bits (130), Expect = 8e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| |||||||| || | | | |||| | || |||| ||| || || |||||| Sbjct 939852 TCCTTTTGTATGTTGTAGTCAGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAG 939793 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-T 44265 |||||||||||||| |||| ||| | ||||||||| || || || || || || | | Sbjct 939792 ATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGTTTTAACGTT 939734 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || || || | ||||||||||||| || ||||| ||||| || | || || || Sbjct 939733 TTCGATAGTATCCGATGATTCCACCTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTGAC 939674 Query 44326 GAAGATTTGCAT 44337 || |||||||| Sbjct 939673 AAATATTTGCAT 939662 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||| || || |||||||||| | || || || |||| |||| ||||| ||||||| Sbjct 933775 CTCCTTCTGAATATTGTAATCGGACAAGGTG-CGTCCGTCTTCCAATTGCTTACCGGCAA 933717 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 | ||||||||||||||||||| || | ||||||||| ||| || || ||| | Sbjct 933716 AAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATTTTAGCCTTGACGT 933657 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | |||||||||| | || || || | || || ||||| || || | || || | Sbjct 933656 TTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGA 933597 Query 44325 CGAAGATTTGCAT 44337 | || |||||||| Sbjct 933596 CAAAAATTTGCAT 933584 Score = 102 bits (112), Expect = 6e-17 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||| || ||||||||||||| | || | ||| |||| |||| ||||| || |||| Sbjct 931940 CTCCTTCTGAATGTTGTAATCGGACAAGGT-GCGTCCGTCTTCCAATTGCTTGCCAGCAA 931882 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-T 44263 | |||||||| |||||||||| || | ||||||||| | | | | || |||| || Sbjct 931881 AAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTAT-CTTGAATTTTAGCTTTAACA 931823 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | || || || | | ||| || |||| ||||| || || || || | || ||| Sbjct 931822 TTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTC 931763 Query 44324 ACGAAGATTTGCAT 44337 || ||||||||||| Sbjct 931762 ACAAAGATTTGCAT 931749 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||| || ||||||||||||| | || | ||| |||| |||| ||||| || |||| Sbjct 933547 CTCCTTCTGAATGTTGTAATCGGACAAGGT-GCGTCCGTCTTCCAATTGCTTGCCAGCAA 933489 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 | |||||||| |||||||||| || | ||||||||| || ||||| ||| | Sbjct 933488 AAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGT 933429 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | || ||||||| | || || || | || || ||||| || || | || || | Sbjct 933428 TTTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGA 933369 Query 44325 CGAAGATTTGCAT 44337 | || |||||||| Sbjct 933368 CAAAAATTTGCAT 933356 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || ||||||||||||| | ||| |||| |||| ||||| || ||||| Sbjct 932168 CTCCTTCTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAA 932109 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||||| |||||||||| || | ||||||||| || ||||| ||| | | Sbjct 932108 AATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTT 932049 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||||| | || || || | || || ||||| || || | || || || Sbjct 932048 TTCAATAGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGAC 931989 Query 44326 GAAGATTTGCAT 44337 || |||||||| Sbjct 931988 AAAAATTTGCAT 931977 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| || | || | || |||| || ||||| || || || ||||| Sbjct 939670 TATTTGCATTCCACCACGGAGACGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTT 939611 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| |||| |||| ||| | | || | ||| || || |||||||||||||| || || Sbjct 939610 GTAGTCGGAGAGTGTGCGGCCATTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTG 939551 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 ||||| || || |||| |||| | | | || | || || ||| | || || |||| Sbjct 939550 ATCTGGTGGGACTCCTT-CTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGG 939492 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||| || || || || || || | ||||||||||||| ||||| Sbjct 939491 ATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGACCTGCAT 939434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359980725820485