Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq192 165 2e-35 seq19 125 2e-23 seq15 123 6e-23 >seq192 Length=539225 Score = 165 bits (182), Expect = 2e-35 Identities = 171/223 (77%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 177911 GGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT 177970 ||||| ||| | || ||||| || ||||| || || || || || ||||| || ||||| Sbjct 278193 GGTTACAATA-TGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGT 278251 Query 177971 GGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030 ||| ||| ||||| ||||| || || ||| ||||||||||||||||| ||||| || Sbjct 278252 CGAACCCTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCC 278311 Query 178031 TCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGC 178090 || |||||||||||| | || ||||||||||| || | |||||||| | || | | Sbjct 278312 ACCCGACCAGCAACGATTGATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGTC 278371 Query 178091 CGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||| | ||||||||||| || | |||||||| ||| Sbjct 278372 CGATTATAATATTCAAAAAGAATCCACCTTACATCTTGTGTTG 278414 >seq19 Length=2240402 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAAC 177995 |||||| | || |||||||||||||| | ||||||||| || || || ||||| ||| Sbjct 941439 AAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATCGGATACTATCGAAAAC 941498 Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 || ||| ||| || || ||||| ||||| || ||||| |||||||| || | ||||| Sbjct 941499 GTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTTT 941558 Query 178056 GCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCA 178115 || || |||||| | |||||||| | || | | || || ||| | ||||| ||||| Sbjct 941559 GCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAACATACAAAAGGAATCT 941618 Query 178116 ACACTGCATCTTGTTTTGAGACTC 178139 || || || | || ||| | ||| Sbjct 941619 ACTCTCCACTTGGTGTTGCGTCTC 941642 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || |||||||||||||| | ||||||||| || || Sbjct 939665 CAAATATTTGTCAAAACTTTGACCGGAAAAACGATCACTTTGGAGGTGGAATCATCGGAT 939724 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| ||| || || ||||| ||||| || ||||| |||||||| Sbjct 939725 ACTATCGAAAACGTTAAAACAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCAG 939784 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || |||||| | |||||||| | || | | || || ||| | Sbjct 939785 CGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCTGACTACAACATA 939844 Query 178104 CAAAAAGA 178111 ||||| || Sbjct 939845 CAAAAGGA 939852 Score = 109 bits (120), Expect = 1e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || || || |||||||| || || || || ||| Sbjct 933587 CAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCCGAC 933646 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| || ||||||||||| ||||| || || || || ||||| Sbjct 933647 ACCATTGAAAACGTCAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAG 933706 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || ||||| || || | ||||| ||| | || |||| ||||||| || | Sbjct 933707 CGTTTGATTTTTGCCGGTAAGCAATTGGAAGACGGACGCAC-CTTGTCCGATTACAATAT 933765 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 || || || || ||| ||||| Sbjct 933766 TCAGAAGGAGTCGACATTGCAT 933787 >seq15 Length=3179940 Score = 123 bits (136), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| |||||||| || || ||||| || || | || || || Sbjct 2518860 AAAATGC---AAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAG 2518916 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || || || ||||| || |||||||| |||||||| || ||||| Sbjct 2518917 CCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCA 2518976 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | || ||||| || ||||| | ||||||||| | || | |||| Sbjct 2518977 GATCAACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGACGCACGTTATCCGAC 2519036 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 |||||| | ||||| || || ||| |||| |||| Sbjct 2519037 TATAACATACAAAAGGAGTCGACATTGCA-CTTG 2519069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203697192712770