Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq19 105 6e-18 seq15 96.9 3e-15 seq192 89.7 5e-13 >seq19 Length=2240402 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || |||||||| |||| ||| ||||| || ||||||||||| ||||||||| Sbjct 939660 CCACCACGGAGACGTAAAACCAAATGGAGCGTCGATTCTTTCTGAATGTTGTAGTCGGAG 939601 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | | || | ||| ||||| || || |||| || ||||| || | || Sbjct 939600 AGTGTGCGGCCATTTTCTAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 939541 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 || | || ||| | ||| |||| | || ||| | | ||| ||| | ||| || Sbjct 939540 ACTC-CTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAAC 939482 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866 ||||| || || ||||| || |||| ||||| ||||| | |||||| ||| Sbjct 939481 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGACCTGCATTTTA 939430 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||||| |||| ||||| || |||||||||||| || || ||||| Sbjct 933810 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCGGAC 933751 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| |||| || | ||||| ||||| || |||| ||||| || || | |||| Sbjct 933750 AAGGTGCGTCCGTCTTCCAATTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGGGGA 933691 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| |||| || | ||| | | |||||| | ||| || Sbjct 933690 ATACCTTCCTTGTCC-TGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGAC 933632 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| || || || ||||| ||||| Sbjct 933631 TTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933584 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||||| |||| ||||| || ||||||||||||||| || ||||| Sbjct 933582 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 933523 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| |||| || | |||||||| || || |||| || || || || | |||| Sbjct 933522 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 933463 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| | || || | ||| | | ||||||| | ||| || Sbjct 933462 ATACCTTCCTTGT-CTTGAATCTTGGCCTTGACGTTTTCAATAGTGTCGGAAGGCTCGAC 933404 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| || || || ||||| ||||| Sbjct 933403 TTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 933356 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||||| |||| ||||| || ||||||||||||||| || ||||| Sbjct 931975 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAATCGGAC 931916 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| |||| || | |||||||| || || |||| || || || || | |||| Sbjct 931915 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 931856 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC 41788 | | ||||| | | ||| |||| |||| ||| Sbjct 931855 ATACCTTCCTTAT-CTTGAATTTTAGCTTTAAC 931824 >seq15 Length=3179940 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||| |||| || |||||| || |||||||||||||| Sbjct 2519090 GCCACCGCGGAGACGGAGTACCAAGTGCAATGTCGACTCCTTTTGTATGTTATAGTCGGA 2519031 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || || | || ||||| ||||| |||| || ||||| || | || Sbjct 2519030 TAACGTGCGTCCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 2518971 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || || || ||| ||| |||| || | || | | ||||||| | ||| | Sbjct 2518970 AATGCCTTCTTTATCC-TGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 2518912 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| || || ||||| || || || || || |||||||| ||||| || Sbjct 2518911 CTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 2518860 >seq192 Length=539225 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || | ||| ||||| ||||| | ||| || || ||||| ||||| ||||| Sbjct 278428 CCACCTCGCAAACGCAACACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 278369 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | ||||| |||||||| |||| || || ||||| | ||| Sbjct 278368 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATCAATCGTTGCTGGTCGGGTGGA 278309 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| | || |||| || | | |||||| | || || Sbjct 278308 ATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 278250 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||| || || ||||| ||||||||||| || Sbjct 278249 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 278199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462291257746000