Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_000902.1 Length=60942 Score E Sequences producing significant alignments: (Bits) Value seq439 239 2e-58 >seq439 Length=76666 Score = 239 bits (264), Expect = 2e-58 Identities = 669/1019 (66%), Gaps = 42/1019 (4%) Strand=Plus/Minus Query 13634 GTTGGCGGTTTTGCTTATATCGCTGAGATCGCAAAGAACACGCCAAGCGCAGCAAACATC 13693 ||||| || ||||| || | || |||| ||| ||| ||||| || ||||| Sbjct 62021 GTTGGTGGATTTGCCTACCTGATGGAAATCGTCAAGTTCACCCCAAGTAGTGCCAACATG 61962 Query 13694 GTTGCCTATGCAATGCA-GGTTCGTGAAACCGCAATGGAACGCTACGCCATCA--ACCGC 13750 || || ||||| ||| ||||||||| |||| ||||| ||||||| ||| || || Sbjct 61961 GTCGCTTATGCC-TGCGTGGTTCGTGATTCCGCCATGGAGCGCTACGGGATCGCTACAGC 61903 Query 13751 ATGACTGAAGCGACGGAATTGCTCTATTCCCGCAACGGAATGACTGCAACGCAGAAGTAC 13810 | | || || | ||| | ||| |||||||||| |||| ||| | |||| Sbjct 61902 AAACCAGATA--ACCGCGTTGTTGTATGCCCGCAACGGTATGAGCACAAGAGAAAAGTTT 61845 Query 13811 GAAGCTATTCAGGCGATTTTCACGCAACTGACAGACCATGCAAAAACCGGATCGCGTCGC 13870 ||| | || || || | || | || | || || || | ||||| || |||||| Sbjct 61844 GAATCAATCCAAACGTTGTTTAGCGAAATTACCGATCACGTCAAAACGGGTAAGCGTCGA 61785 Query 13871 GGCCTTCGCTCATTTGGCGAGGTCATGGAAGACTGGGTTAGCGACCTTGAGAAGCGATT- 13929 || | || | || || || |||| || ||| || ||| | || |||| || Sbjct 61784 GGTGCGAGGCCACTAGGGGACGTGATGGCTGATTGGCTTGACGAAGTAGATCAGCGTTTC 61725 Query 13930 --TGACCCGTCAGGCGAACAACGAGGAATGAGCACAGGGATCCCATCGCTGGACAGGATG 13987 ||| | | || || | ||||||| || || |||||||| ||||| || | Sbjct 61724 AGTGATACTACT--CGGACTA-GAGGAATTAGAACGGGGATCCCGTCGCTAGATGAACTT 61668 Query 13988 CTGTCACCGAAAGGTCTGGTGAAAGGCTCTCTGTTTGTCATTGGCGCTCGCCCTAAGATG 14047 || ||| || || ||||| || || ||| | ||||| || ||||| || || ||| Sbjct 61667 CTCCAACCCAAGGGACTGGTTCGTGGTTCGCTGATGGTCATCGGTGCTCGTCCCAAAATG 61608 Query 14048 GGGAAAACGACGCTATACAGCCAGATGGCAATCAATTGCGCAGTGCATGAGAAAAAGCCC 14107 || || || ||| | ||| || |||| | |||||||| |||| || || ||| Sbjct 61607 GGCAAGACAACGTTGTACTCACAATTGGCTCTTAATTGCGCCTTGCACGAAAATTTGCCT 61548 Query 14108 GCTCTGATGTTCAGCCTTGAAATGCCAGGTGATCAGATACTGGAAAAACTGGTAGGACAG 14167 || | ||||||||||||| ||||||| | || ||| | || || | || ||| Sbjct 61547 GCCGTACTGTTCAGCCTTGAGATGCCAGACAAGCAAATATTCGAGCGCATGATCGGCCAG 61488 Query 14168 AAGTCAGGTGTTAACCCGAATATTTTTTACCTTCCGGCGACAAATGACGCCGATGACGGC 14227 ||||| | || | ||||||||||| | ||| | |||| |||| || Sbjct 61487 TCATCAGGAATCAATACTGATATTTTTTACTGT--GGC----ACTGACAACGATAGCGAT 61434 Query 14228 TATCAGGGTGATTACGATGGTGACTTCAACAGGGCGATCGAAACAGCTAATCGCTTGAGT 14287 | || | | || | ||| | | || | |||| || | Sbjct 61433 T-TC--GCTTATGCCAATGCTAAA---------GCATTGGAAA------------TGGTT 61398 Query 14288 GAAATCGACCTGCTTTACATCGACGACACGCCGGGATTATCTCTGGCTCAAATCGTCAGC 14347 ||| || | |||| | | || ||||| |||||| ||| || ||| || Sbjct 61397 GAATCCGGCAATCTTTTCGTTGATGACACACCGGGAGCCAGTCTAAGCCATATCATCGCA 61338 Query 14348 GAAAGCCGTCGAATCAAACGAGAAAAAGGATGCGTTGGCATGATTCTGGTCGATTACCTG 14407 ||||||||| | || || || || || || || ||| | ||||||||||||||| Sbjct 61337 GAAAGCCGTAGGATTAAGCGTCAATGCGGTAAGGTAGGTATGGTGCTGGTCGATTACCTG 61278 Query 14408 ACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGCATGATCACCAAA 14467 || || ||| || ||||| ||||| ||||||||| | || ||||| || || ||||| Sbjct 61277 ACGCTTATGCGGGCAGAGAAAGCCGACCGCAACGACTTGGCGTACGGGATTATAACCAAG 61218 Query 14468 GGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTTGTTGTGCTTCTGACGCAGCTTAAC 14527 ||||| |||||||||||||| |||||||||||| |||| ||||| || || ||| | ||| Sbjct 61217 GGACTCAAGAACCTTGCCAAGGAGCTTGATTGCATTGTGGTGCTGCTAACACAGTTAAAC 61158 Query 14528 CGCGCACTGGAAAGCCGAACCAATAAACGCCCACTACCAAGTGACTCACGAGATACAGGG 14587 |||| || || | || || |||||||| | ||||||||| ||||||| || Sbjct 61157 CGCGACCTTGAGAAACGTGTTAACAAACGCCCCCAGCCAAGTGACAGCAGAGATACTGGC 61098 Query 14588 CAGATTGAACAGGATTGCGATTATTGGGTGGGGATCCATCGTGAAGGTGCTTTTGATGA 14646 ||||||||||| || || ||||| ||| |||||||| | || |||||||||| ||| || Sbjct 61097 CAGATTGAACAAGACTGTGATTACTGGCTGGGGATCTACCGGGAAGGTGCTTATGACGA 61039 Score = 230 bits (254), Expect = 9e-56 Identities = 409/597 (69%), Gaps = 0/597 (0%) Strand=Plus/Minus Query 5833 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 5892 ||| ||||| ||||| ||| |||| |||||| | ||| |||||| |||| || || Sbjct 70427 CCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAAA 70368 Query 5893 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAACCACGACATA 5952 ||| || || ||| ||||| | | ||||| || || || || |||| | ||| | Sbjct 70367 CTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGTT 70308 Query 5953 ATGCAGGCCTTCACGCTTCATACGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 6012 || || |||||||| ||||| || ||||||||||| ||||| | ||| || ||||| | Sbjct 70307 GTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCCC 70248 Query 6013 TGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 6072 || ||||||||||| |||| ||||| ||||| || |||| || ||| | || || || Sbjct 70247 CGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGCC 70188 Query 6073 ACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAAGGCCATT 6132 | || | || || || || || || || ||||| || || || | ||||| || Sbjct 70187 ATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCAG 70128 Query 6133 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTCGCGATAGAT 6192 || ||||| || |||||||| ||||| || ||||||| ||||| | || Sbjct 70127 CCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATAT 70068 Query 6193 GATCGGGGATTCAATAACATTCACGCCGGAAGTGAACTCAAACAGGGTTCTGGCGTCGTT 6252 ||| ||| || ||||| | | || | ||||||||||||||| ||| || | | Sbjct 70067 GATGGGGACGTCGATAACGGTTAACCCTGTAGTGAACTCAAACAGTCGTCTTGCTACCTC 70008 Query 6253 CTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGGGGATTTCCGGAGCCACACCGGTGCA 6312 |||| | ||||||||| | || | | || | ||| |||| ||||| || Sbjct 70007 TTCGTTTTCTTTTCCCCATTCTAGCGGCCTTGCCTTCACTTCGGGAGATTGCCCGGTACA 69948 Query 6313 AACCTCGGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 6372 || |||||||| ||| ||| |||||| ||| ||| | || | ||| || || ||||| Sbjct 69947 AATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCCTGA 69888 Query 6373 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAA 6429 || || | | |||||| | | | ||||| ||||| ||| |||| || || || Sbjct 69887 ACGTGGGCTGGAAATCACGCAGGAAGCCTCTGAGGCGGTTATGGCGCCAAGGCGCAA 69831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194888979004848