Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_000929.1 Length=36717 Score E Sequences producing significant alignments: (Bits) Value seq552 147 5e-31 seq742 109 1e-19 >seq552 Length=31981 Score = 147 bits (162), Expect = 5e-31 Identities = 294/428 (69%), Gaps = 21/428 (5%) Strand=Plus/Plus Query 35097 GATTGGCTATGTAAGGGTATCAACAAATGACCAGAATACAGACCTGCAACGAAACGCTCT 35156 ||| |||||| | ||||| |||| ||||||||| || || || | || | ||| | || Sbjct 30612 GATAGGCTATATGAGGGTGTCAAAAAATGACCAAAACACCGATTTACAGCAAAAATC-CT 30670 Query 35157 TG-TTTGTGCAGGATGTGAACAAATATTTGAAGATAAATTAAGCGGAACAAGGACAGACC 35215 || |||| ||| |||||||| || ||||| |||||| | ||||||| || |||||| Sbjct 30671 TGATTTGCGCAAATTGTGAACAGATTTTTGAGGATAAAATCAGCGGAAAAA---CAGACC 30727 Query 35216 ---GACCGGGATTAAAACGCGCTTTAAAGCGCCTTCAAAAAGGTGACACACTGGTTGTCT 35272 |||| ||||| |||||||| || | || || || ||||| | || |||| Sbjct 30728 AGAGACCCGGATTTAAACGCGCGCTAGATGCACTGAAATCGGGCGACACTTTAGTCGTCT 30787 Query 35273 GGAAACTGGATCGCCTCGGGCGAAGCATGAAACATTTGATTTCTCTCGTAGGGGAATTAC 35332 |||| ||||| | || || || || || |||||||||||| || | || || | Sbjct 30788 GGAAGATGGATAGACTGGGTCGCAGTATTAAACATTTGATTACTTTAATATCCAAACTGG 30847 Query 35333 GAGAGCGAGGGATTAATTTTCGCAGTCTTACTGA---CAGTATTGATACGTC-ATCTCCA 35388 ||| || ||| |||||| ||| | || || || |||||||| || | ||| Sbjct 30848 AAGATGAAGATATTTATTTTCATAGTTTGACGGATTCCA--ATTGATACCTCTACATCCT 30905 Query 35389 ATGGGGCGTTTTTTCTTCCACGTTATGGGTGCCCTGGCTGAAATGGAACGAGAACTAATT 35448 | || ||||||||||| || || ||| |||| |||| | || || |||||||| ||| Sbjct 30906 CT-GGCCGTTTTTTCTTTCATGTGATGAGTGCGTTGGCACAGATAGAGCGAGAACTGATT 30964 Query 35449 ATCGAGCGAACGATGGCTGGACTTGCTGCCGCCAGAAATA------AAGGCCGTATTGGT 35502 | ||||| || | ||| || | || || | |||| || || ||||||||| Sbjct 30965 GTTGAGCGTACTAAGGCAGGTTTGGCAGCAACGAGAAGTAGGGGGCGGGGGCGTATTGGT 31024 Query 35503 GGGCGACC 35510 || |||| Sbjct 31025 GGCAGACC 31032 >seq742 Length=3411 Score = 109 bits (120), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 35966 CCAGATTGTTGGCTATGGTTCAAAGGAGCTGCGCGTTGAAACCATATCCTGCTGGCTGGC 36025 |||||||||||| || || | | | || |||| || |||||||| ||||||||||||| Sbjct 200 CCAGATTGTTGGATACGGCTTACACGAATTGCGGGTAGAAACCATTGCCTGCTGGCTGGC 141 Query 36026 CCGCACAATTATTCAGACAAA---GCACTATTCCCGCCGTTTTGTGAATAACTCTTACCT 36082 |||| ||| | |||| ||| ||| ||| || ||||| ||||| || | || Sbjct 140 CCGCGTCATTGTA---ACAAGTCGGCATTATAGCCGGCGGTTTGTTAATAATTCCTGGCT 84 Query 36083 TCACCTGGGGGTATTCAGCGGACGCGATCTGGTTGGCGTTCTCCAGTGGGGATATGCCCT 36142 || || ||||||||| ||| | | | |||||||||| | ||||||||||| ||||| Sbjct 83 ACATCTTGGGGTATTCTCCGGTAGGGCTTTGGTTGGCGTGATGCAGTGGGGATACGCCCT 24 Query 36143 TAACCCCAAC 36152 || || ||| Sbjct 23 GAATCCTAAC 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117370498832898