Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq184 197 1e-45 seq146 93.3 4e-14 >seq184 Length=525875 Score = 197 bits (218), Expect = 1e-45 Identities = 421/618 (68%), Gaps = 8/618 (1%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 |||||||||| ||||||| ||||| ||||| ||| ||||| || || | | || Sbjct 28966 ATCCGCTACATATTCTATGTATTGACACATACTTTCATTATTCATACCGATTAAATTGAC 28907 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCC-TTAATAATACTAG 16916 || |||||||| |||| |||| | || || ||| || || ||| || | | | Sbjct 28906 TGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGGCATCGGTTATTATTTCCAA 28847 Query 16917 CAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGC 16976 | ||||| | || |||| | ||| | | || ||||||||| | | || || |||| Sbjct 28846 TATG-CGTTCTTTGGTCGGTTTTTGTATCAAATATTTAAACATTAAAACCGCAAATTCGC 28788 Query 16977 AATGTAATCCCTCGTCTC-TGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTT 17035 ||||||| || || || | || | ||| ||| ||||||||||| | || ||||| || Sbjct 28787 AATGTAAACCTTCATCGCGTGATATTAA-TTCATTAGAAAATGTTAGACCCGGCATTATT 28729 Query 17036 CCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACG 17095 || |||||||| | ||||||||||| || || ||| |||||||||||| |||||| Sbjct 28728 CCACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCACTAAAGAATATACCTTCGACG 28669 Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCTG 17154 | ||||| || || | || || | | |||| | | || ||||| || Sbjct 28668 GCAGCAAAAGCTATGACACGCTCACCAAAATTCGC-CGAACGCGATGATATCCA-AGCTA 28611 Query 17155 CA-CCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCT 17213 | |||| || ||||| | || | | |||||| || ||||| ||||| | | | Sbjct 28610 AAGCCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTCAATGGCATTAAAAAGATAAT 28551 Query 17214 CTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTA 17273 | ||| | | || ||| | || || || |||| || |||||||| ||||||| Sbjct 28550 CGCGTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAAACTATACATTTCCGAGTGTA 28491 Query 17274 TGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCA 17333 || || |||||||| ||||| || |||||||| || ||||| | || ||||||||| Sbjct 28490 CATTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGCTTCGGTTACTTGAACTTCTT 28431 Query 17334 CGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 | || |||||| ||| ||| || || || |||||||| || || ||||| |||| Sbjct 28430 GAGAAAAACGTTCCACTAAATTCTCATTAACAATGCCGTCAGATGCCGCAAAAAAAGCCA 28371 Query 17394 ATATATGCTTAATGAAAT 17411 | | ||| ||| |||| Sbjct 28370 AAACATGTGAAATAAAAT 28353 >seq146 Length=585010 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 |||||||| ||||| |||||||||||||| || ||| ||||| ||||| | ||| | Sbjct 531892 CCCACGTAACCGTTAGGATCCGTTCCATCCAAACTGTACTTATCATTTAA--AAATAGTG 531949 Query 119921 ACGCTT--AACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACA 119978 | || || || ||||||||| | ||||||||| || ||||| ||||| |||| Sbjct 531950 AAATTTCTAAAGCGTCTTCAGGAGTTTTAGACCATTCCAGAATCTTTTTCGCCCAATACA 532009 Query 119979 TACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATA 120038 | || || | || ||||||||||| || | | || ||| | || || | ||||| | Sbjct 532010 TGCGCAAAAAACCGTGCATTTTACCCTCTCTTATCAATTGTAACTGAGCTGAATTCCACA 532069 Query 120039 AGGGATCGT 120047 | ||||| Sbjct 532070 AATCATCGT 532078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517534919152680