Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq184 214 2e-50 seq146 105 7e-18 >seq184 Length=525875 Score = 214 bits (236), Expect = 2e-50 Identities = 418/604 (69%), Gaps = 14/604 (2%) Strand=Plus/Minus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTA 16094 ||| |||||| ||||||| ||||||||||| || ||| || || || || | | | Sbjct 28966 ATCCGCTACATATTCTATGTATTGACACATACTTTCATTATTCATACCGATTAAATTG-A 28908 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | || ||||||| ||| | ||||| | ||| || ||| || || | || || || Sbjct 28907 CTGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGGCATCGGTTATTATTTCCA 28848 Query 16155 TGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGC 16214 ||| || | |||| | || | | | ||||||||||| | ||| || |||| Sbjct 28847 ATATGCGTTCTTTGGTCGGTTTTTGTATCAAATATTTAAACATTAAAACCGCAAATTCGC 28788 Query 16215 AATGTAGTCCTTCGTCTC-TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 |||||| ||||| || | || | ||| ||| || ||||| |||| || |||||| || Sbjct 28787 AATGTAAACCTTCATCGCGTGATATTAA-TTCATTAGAAAATGTTAGACCCGGCATTATT 28729 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || |||||||| | ||| ||||||| |||||| || |||||||||||| || || Sbjct 28728 CCACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCACTAAAGAATATACCTTCGACG 28669 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC--ATCTTTATTACGAATCCATTTCT 16391 | |||||||| || | || || | | | || | | || | ||||| || Sbjct 28668 GCAGCAAAAGCTATGACACGCTCACCAAAATTCGCCGAACGCGATGA--TATCCA-AGCT 28612 Query 16392 GTA-CCCATTCGGCTTTTTGTTTTATACAATC--CATCGTTTCTATGGCCTTAAACAATT 16448 | ||||||| ||||| | ||||| || | | |||||| || ||||| ||||| | | Sbjct 28611 AAAGCCCATTCCGCTTTCT-TTTTA-ACTAACGGCATCGTCTCAATGGCATTAAAAAGAT 28554 Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508 || ||| | ||| ||| | || ||||| |||||||| |||||||| |||| Sbjct 28553 AATCGCGTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAAACTATACATTTCCGAGT 28494 Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTT 16568 ||| || || |||||||| ||||| ||||| ||||| ||||| || | || ||| |||| Sbjct 28493 GTACATTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGCTTCGGTTACTTGAACTT 28434 Query 16569 CCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACG 16628 | |||| |||||| | | |||||||| || || |||||| ||| |||||||| | Sbjct 28433 CTTGAGAAAAACGTTCCACTAAATTCTCATTAACAATGCCGTCAGATGCCGCAAAAAAAG 28374 Query 16629 CCAA 16632 |||| Sbjct 28373 CCAA 28370 >seq146 Length=585010 Score = 105 bits (116), Expect = 7e-18 Identities = 138/189 (73%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073 |||||||| ||||| ||||| ||||| || || ||||||||| ||||| | ||| | Sbjct 531892 CCCACGTAACCGTTAGGATCCGTTCCATCCAAACTGTACTTATCATTTAA--AAATAGTG 531949 Query 119074 ACGCTT--AACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACA 119131 | || || || ||| ||||| ||| ||||||||| || ||||| ||||| |||| Sbjct 531950 AAATTTCTAAAGCGTCTTCAGGAGTTTTAGACCATTCCAGAATCTTTTTCGCCCAATACA 532009 Query 119132 TACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATA 119191 | || ||| | ||||||||||||||||| | |||| || | || || | ||||| | Sbjct 532010 TGCGCAAAAAACCGTGCATTTTACCCTCTCTTATCAATTGTAACTGAGCTGAATTCCACA 532069 Query 119192 GAGGATCGT 119200 | ||||| Sbjct 532070 AATCATCGT 532078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403845685320