Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq54 147 2e-30 >seq54 Length=1370671 Score = 147 bits (162), Expect = 2e-30 Identities = 415/630 (66%), Gaps = 8/630 (1%) Strand=Plus/Plus Query 18564 GGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTT 18623 || || ||||| ||||||| |||| || | ||||||||| | ||| ||| | Sbjct 1326715 GGCACCTTATCAATATTTGGTGCGCAATTGCGTTTCAATTTGCGCGAAACATTCCCTTTG 1326774 Query 18624 TTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGC 18683 | ||||| || || |||||| | || || || |||||| | ||||||||||| || Sbjct 1326775 CTTACTACGAAAAAAGTATTTTGGCGTGCTGTAGTAGAAGAGCTATTATGGTTTATAAGC 1326834 Query 18684 GGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGATAT--ATACG 18741 || || ||| |||||| || |||| | || || ||||||||| ||| Sbjct 1326835 GGCAGCACTGATGCCAAAGTGCTACAAAATAAAAACATCCATATATGGGATGGTAATAGT 1326894 Query 18742 GATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTTGGCC 18801 ||| | ||||| | |||| || || || | | | || ||| | || | Sbjct 1326895 AGTCGCG--AATTTTTGGATAGATGCGGTTTTAATGATCGCGAAGAAGGTGACTTAGGAC 1326952 Query 18802 CCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACT 18861 ||||||| || || |||||| |||||||||||||| |||||| | ||||| ||| | Sbjct 1326953 CCATTTATGGTTTTCAGTGGCGACATTTTGGAGCGCAATATAGAACTTGTCACGAAAATT 1327012 Query 18862 ATT-TACAGCAAGGAATCGATCAGCTGCAAACTGTTAT-AGATACAATTAAAACAAACCC 18919 || ||| | |||| |||| || | ||| | || ||| ||||| | ||||| || Sbjct 1327013 ATGGTACGG-AAGGGGTCGACCAATTAAAAAACATCATTAGA-ACAATAACGACAAATCC 1327070 Query 18920 AGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACT 18979 | ||||| |||||| |||| ||||||||||| ||||| || ||||| | Sbjct 1327071 TACAGATCGACGTATGATTTTATCCTCTTGGAATCCGGTAGATATACCAAAAATGGCTTT 1327130 Query 18980 ACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGT 19039 ||| || ||||| || ||| ||||| || || || |||||| | ||||||| | Sbjct 1327131 ACCACCCTGTCATTGCTTGGCTCAATTTTATGTGGCCAATAATGAATTGTGCTGCCAACT 1327190 Query 19040 ATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACT 19099 || || | | ||||||||| | || || || || || || || ||||| || Sbjct 1327191 TTATCAACGTAGTGCAGATATGGGCTTGGGTGTCCCCTTTAATATAGCCTCGTATGCCCT 1327250 Query 19100 TCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAAT 19159 | || |||| | || ||| | || || |||||| | || || || | || |||| Sbjct 1327251 CTTAACGAACATGATTGCACATTTAACCGGCCTTAAACCAGGCGACTTTGTGCACACAAC 1327310 Query 19160 GGGGGATGCACATATTTACTTGAATCATAT 19189 || ||| | ||||| ||| |||||||| Sbjct 1327311 CGGTGATACCCATATATACAAAAATCATAT 1327340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399495961355295