Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq53 95.1 1e-14 seq1 93.3 3e-14 >seq53 Length=1361919 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 ||||||||||||| ||| | || |||||||| |||||||| || || ||| ||||| Sbjct 1232339 TAAAAATGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAAC 1232398 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 | | || || | | || | || ||| || || ||||||||| | || | Sbjct 1232399 CATCTGATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCCG 1232458 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 |||| || | | |||||||| ||||||||| |||||||| || || | |||| Sbjct 1232459 ATCAGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGTCTGATT 1232518 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||||| ||||| ||||| || | ||| |||| |||| Sbjct 1232519 ACAATATACAAAAAGAATCAACATTGCACTTGGTTCTACG 1232558 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| ||||| || |||||||| || ||| || || | Sbjct 1234236 ATGCAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCC 1234295 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | |||| || || ||||| |||||| | ||| ||| || Sbjct 1234296 GATACCATTGAAAACGTCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 1234355 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | ||||| || || ||||||||||||||| | ||| | ||||||| || Sbjct 1234356 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAAC 1234415 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||||||||| |||||||| || |||| ||||| Sbjct 1234416 ATTCAAAAGGAGTCTACTCTCCATTTGGTCTTACG 1234450 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| ||||| || ||||||||||| ||| ||||| | Sbjct 1239989 ATGCAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAACCATCG 1240048 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | || ||||||| |||||||||||| | || |||||| Sbjct 1240049 GATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 1240108 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | || ||||| ||||||||||| ||||| | ||| | | ||||||||| Sbjct 1240109 CAGCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATTACAAT 1240168 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 | |||||||||||||| | || ||||||| || Sbjct 1240169 GTACAAAAGGAATCTACATTGCATTTGGTGTTGCG 1240203 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | ||||| ||||| |||||||||||||| || ||||| | Sbjct 1240216 AATGCAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAACCATC 1240275 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | ||| ||||||| |||||||||||| | || ||| || Sbjct 1240276 GGATACTATCGAAAACGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGACCA 1240335 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || | | |||||||| |||||||| ||||||| ||| | | || ||||| Sbjct 1240336 GCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGACTACAA 1240395 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||| || || ||||| ||| | || ||||||| || Sbjct 1240396 TATACAGAAAGAATCAACTTTGCATTTGGTGTTGCG 1240431 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| ||||| |||||| ||||||| || ||||| | Sbjct 1241334 AATGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATC 1241393 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | | || ||||||| |||||||||||| | || |||||| Sbjct 1241394 AGATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCA 1241453 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || | | |||||||| ||||||||||| ||||| ||| | | |||||||| Sbjct 1241454 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACAA 1241513 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| || || ||||| ||| | || ||||| Sbjct 1241514 TATACAGAAAGAATCAACTTTGCATTTGGTG 1241544 >seq1 Length=10097680 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 |||||||||||| ||| | ||||| | || |||||||| ||||| ||| || || Sbjct 7547385 AAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCC 7547444 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | || ||||| |||||| || ||||| || | || ||| Sbjct 7547445 TTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGA 7547504 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||| ||| | | ||||| || |||||||||||||||||| ||| || | ||||| Sbjct 7547505 TCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTA 7547564 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||| || || ||||| || | || |||| | || || ||||| || Sbjct 7547565 CAATATACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGG 7547615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410788534126514