Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq184 143 3e-29 seq53 118 1e-21 seq1 111 2e-19 seq308 100 3e-16 >seq184 Length=525875 Score = 143 bits (158), Expect = 3e-29 Identities = 341/511 (67%), Gaps = 6/511 (1%) Strand=Plus/Plus Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||||||| || | || | || || ||||| || || || |||| ||||| || Sbjct 28325 TGGGAGCGATTAACTGATGATGAACGTCATTTTATTTCACATGTTTTGGCTTTTTTTGCG 28384 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || |||||||| || || |||||| | || || ||||| |||| || || || || Sbjct 28385 GCATCTGACGGCATTGTTAATGAGAATTTAGTGGAACGTTTTTCTCAAGAAGTTCAAGTA 28444 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 |||| || || ||||| || || ||||| || ||||| || || || |||||||||||| Sbjct 28445 ACCGAAGCTCGTTGCTTTTATGGTTTTCAAATAGCCATCGAAAATGTACACTCGGAAATG 28504 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT---TGTTG 116950 ||| || || || || | | ||| || || |||| | | || | || Sbjct 28505 TATAGTTTACTTATTGAAACATTTAT-CGCAGATCCGA-AAGAA-CGCGATTATCTTTTT 28561 Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC 117010 || ||||| ||||||||||||| || ||| |||| || || ||||| | ||||| Sbjct 28562 AATGCCATTGAGACGATGCCGTTAGTTAAAAAGAAAGCGGAATGGGCTTTAGCTTGGATA 28621 Query 117011 GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 | | ||| || || ||||| | | || || || |||||||| || | Sbjct 28622 TCATCGCGTTCGGCGAATTTTGGTGAGCGTGTCATAGCTTTTGCTGCCGTCGAAGGTATA 28681 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 |||||| || ||||| || | ||||||||||| |||||||| || | ||||| || Sbjct 28682 TTCTTTAGTGGAAGTTTTGCTTCGATATTTTGGCTTAAGAAACGTGGAATAATGCCGGGT 28741 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 || || || || || | || || | || || ||| | |||||||| ||||| | Sbjct 28742 CTAACATTTTCTAATGAATTAATATCACGCGATGAAGGTTTACATTGCGAATTTGCGGTT 28801 Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 || |||| || ||||| | || ||||| Sbjct 28802 TTAATGTTTAAATATTTGATACAAAAACCGA 28832 >seq53 Length=1361919 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| || ||||| | || ||||||||||| || | || || ||| | | Sbjct 1240216 AATGCAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAACCATC 1240275 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | ||||| | |||| |||||||| || ||||| || || || | |||| Sbjct 1240276 GGATACTATCGAAAACG-TTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGACC 1240334 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || |||||||||||||| |||| || || ||| ||||||| Sbjct 1240335 AGCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGACTACA 1240394 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 | || ||||| || | || ||||| | |||||||| Sbjct 1240395 ATATACAGAAAGAATCAACTTTGCATTTGGTGTTGCG 1240431 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || ||||||||||| || | || || || | || Sbjct 1239761 ATGCAAATTTTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCC 1239820 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| | || | || || | || || || || || ||| | ||||| Sbjct 1239821 GACACTGTTGAAAACG-TTAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCA 1239879 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || ||||| |||| || | ||||| ||| || ||||| Sbjct 1239880 GCAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAA 1239939 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||| || | || ||||| |||||||||| ||| | || ||| Sbjct 1239940 CATACAGAAAGAATCAACCTTGCATTTAGTGTTGCGTTTGCGCGGTGGC 1239988 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||||||||| | || ||||| | || Sbjct 1234236 ATGCAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCC 1234295 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || ||||| |||| | || || | || || || || || ||| | ||||| Sbjct 1234296 GATACCATTGAAAACG-TCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCA 1234354 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || ||||| |||| || | || || ||| ||| || || Sbjct 1234355 GCAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAA 1234414 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || |||||| | || || ||| | || || ||| || | || || Sbjct 1234415 CATTCAAAAGGAGTCTACTCTCCATTTGGTCTTACGCCTGCGTGGTGG 1234462 >seq1 Length=10097680 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| ||||| ||||| || || |||||||| || || | || || || | Sbjct 7547385 AAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCC 7547444 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | ||| |||||| ||||||| |||||||||||||| || | || Sbjct 7547445 TTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGA 7547504 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||| | |||| ||| |||||||| |||| || | ||| || | || || Sbjct 7547505 TCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTA 7547564 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||||| || | || ||||| | || | || ||| | || || Sbjct 7547565 CAATATACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGG 7547615 >seq308 Length=190705 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || |||||||| || |||||||| ||||| || | || ||||| || Sbjct 86851 AATATGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCGAGCCC 86792 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | || | || |||| ||||||||||| || || | ||| Sbjct 86791 TCTGATACTATTGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 86732 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || |||||| | |||| ||| || ||||| |||| || | ||||| | || || Sbjct 86731 CAACAACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATCGGATTAT 86672 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || || ||||| | ||||| |||||||| ||| | || || Sbjct 86671 AATATTCAAAAAGAATCCACGTTACATCTTGTGTTGCGTTTGCGAGGTGG 86622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208567163760