Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq731 636 4e-178 >seq731 Length=3676 Score = 636 bits (704), Expect = 4e-178 Identities = 797/1091 (73%), Gaps = 2/1091 (0%) Strand=Plus/Minus Query 2147 CCCCAAATCAGGGCTCACAGACGGGGCCTGTTTCGGCCCACGGATACCTGGGCGATTCAT 2206 |||| ||||| || || || || || ||||||||||| ||| ||| ||||| || | Sbjct 1094 CCCCCAATCAAGGATCGCAAACTGGCCCTGTTTCGGCGTCCGGCAGCCTAGGCGACTCGT 1035 Query 2207 CCATTAACGATGAACGGATACTGCAAATTTCGACTGTGTGGCGCTGCGTGAGCCTGATTT 2266 || || |||| || || ||||||||||| || ||||||||||| || |||||| Sbjct 1034 TGATCAATGATGTGCGCATTCTGCAAATTTCTACCGTGTGGCGCTGTGTTTCATTGATTT 975 Query 2267 CAACGCTCACGGCATGCTTACCGCTTGATGTCTTCGAAACAGACCAGAATGACAACCGTA 2326 | || | ||||| | || || | ||||| || |||||||| || || |||||| Sbjct 974 CGACCTTAACGGCCAGTTTGCCATTAGATGTATTTAAAACAGACGGTAACGATAACCGTG 915 Query 2327 AAAAAGTGGATTTGAGCAATCCACTGGCGCGACTGCTGCGCTACTCACCGAATCAGTACA 2386 || |||| || || || ||||| | | ||||| | || || ||||| |||| Sbjct 914 CCAAGGTGGGGCTGGATAACCCTCTGGCAAGGTTACTGCGTTTTTCTCCCAATCAATACA 855 Query 2387 TGACCGCCCAAGAATTCAGGGAGGCCATGACGATGCAGCTCTGTTTCTACGGTAACGCAT 2446 |||||| || || || | ||| | ||||| ||||| |||||||| ||| |||| || | Sbjct 854 TGACCGTGCAGGAGTTTCGTGAGTCAATGACCATGCAACTCTGTTTTTACAGTAATGCCT 795 Query 2447 ATGCACTTGTGGACCGCAACAGCGCAGGTGACGTGATCAGCCTTCTCCCGCTTCAGTCTG 2506 |||| || | || ||||| | | || || ||| | |||||| | ||||| | ||| | Sbjct 794 ATGCGCTGATTGAGCGCAATGGGGTTGGCGATGTGGTTAGCCTTATTCCGCTGCTGTCGG 735 Query 2507 CCAATATGGATGTGAAGCTCGTCGGaaaaaaaGTGGTTTATCGCTATCAACGCGACAGCG 2566 ||||||||||||| ||| | || ||| | |||||||| ||||||||||| | Sbjct 734 CCAATATGGATGTCCGGCTGGAAGGGAAACGCATCGTTTATCGATATCAACGCGATCATG 675 Query 2567 AATACGCCGACTTTTCGC-AGAAAGAGATTTTTCACCTTAAAGGCTTCGGATTCACCGGG 2625 ||| ||| |||||| || || |||| ||||| ||||| || || ||||| || | ||| Sbjct 674 AATTTGCC-ACTTTTAGCCAGCAAGAAATTTTCCACCTGAAGGGATTCGGGTTTAACGGA 616 Query 2626 CTTGTAGGCCTGTCACCCATTGCTTTTGCCTGTAAATCGGCAGGTGTGGCAGTTGCGATG 2685 | || ||| | || || || || ||||||||||| ||| || || || || |||||| Sbjct 615 TTAGTGGGCTTATCTCCGATAGCACATGCCTGTAAATTGGCTGGCGTAGCCGTAGCGATG 556 Query 2686 GAGGACCAGCAGCGAGATTTCTTTGCCAACGGCGCCAAGTCTCCGCAAATCCTCTCAACT 2745 || || |||||||| || |||| ||||||||||| ||||| || |||| || || || Sbjct 555 GAAGATCAGCAGCGTGAGTTCTACGCCAACGGCGCTAAGTCACCCAAAATTCTATCTACA 496 Query 2746 GGCGAAAAAGTGCTAACTGAACAGCAGCGCTCCCAGGTCGAAGAGAACTTCAAAGAGATC 2805 || ||| ||||| || || |||||||| || | ||||||||||||||||| ||| Sbjct 495 GGAGAACGGGTGCTTTCTAAAGAGCAGCGCGAACAATTGGAAGAGAACTTCAAAGAAATC 436 Query 2806 GCCGGCGGCCCGGTaaaaaaaCGCCTCTGGATTCTGGAAGCGGGTTTTTCTACATCGGCA 2865 || |||||||||||||||||||| | ||||| |||| || ||| || | Sbjct 435 GCTGGCGGCCCGGTAAAAAAACGATTGTGGATATTGGAGGCAAACTTTCAGACTCATGAT 376 Query 2866 ATTGGCGTAACTCCGCAGGATGCCGAAATGATGGCGTCCCGAAAATTTCAGGTAAGTGAA 2925 || ||||| | ||||||||||||||||| |||||| || || || || ||||| |||||| Sbjct 375 ATCGGCGTGAGTCCGCAGGATGCCGAAACGATGGCATCTCGTAAGTTCCAGGTCAGTGAA 316 Query 2926 CTGGCGCGATTCTTTGGCGTACCGCCTCACCTTGTCGGCGACGTCGAGAAATCAACGAGC 2985 ||||||||||||||||| ||||| || ||||| || || || || || ||||| || || Sbjct 315 CTGGCGCGATTCTTTGGTGTACCACCACACCTCGTAGGGGATGTGGAAAAATCGACCAGT 256 Query 2986 TGGGGATCGGGCATCGAGCAGCAGAATCTCGGCTTCCTGCAGTACACGCTGCAGCCCTAT 3045 || ||| | ||||||||||| |||||||| || || || |||||||| |||| || ||| Sbjct 255 TGAGGAACTGGCATCGAGCAACAGAATCTGGGATTTCTCCAGTACACCTTGCAACCGTAT 196 Query 3046 ATCTCCCGGTGGGAAAACAGTATTCAGCGATGGCTGATCCCATCGAAAGACGTTGGCCGC 3105 || ||||| ||||||||||| |||||||| |||||| | | | | || || Sbjct 195 ATTTCCCGCTGGGAAAACAGCATTCAGCGTTGGCTGTTGAAGCCTGATCAGGTGGGTATG 136 Query 3106 CTACATGCTGAGCACAATCTTGATGGTCTCCTGAGGGGCGATTCTGCCTCCCGTGCCGCG 3165 || || || || ||||||||||| || || | || || ||||| || || || ||| Sbjct 135 TATCACGCCGAACATAATCTTGATGGCCTGTTGCGCGGTGACTCTGCATCACGCGCTGCG 76 Query 3166 TTCATGAAGGCAATGGGAGAGTCCGGCCTGCGTACCATCAACGAAATGCGCCGAACAGAC 3225 |||||||| | ||||| || || || ||||||||||||||||| |||| || ||| Sbjct 75 TTCATGAAATCGATGGGCGAATCGGGGTTGCGTACCATCAACGAAGTGCGGCGCCTCGAC 16 Query 3226 AACATGCCGCC 3236 || ||||| || Sbjct 15 AATATGCCTCC 5 Score = 618 bits (684), Expect = 1e-172 Identities = 616/796 (77%), Gaps = 2/796 (0%) Strand=Plus/Minus Query 4370 CTGATCCAGCCTATGCAGATCCCAGGCATCATCATGCCAGGCCTGCGCCGTCTTACCATT 4429 || || ||||| ||||| | ||||| ||| | ||||||||| |||| ||| | || Sbjct 2859 CTCATTCAGCCCATGCAAGTGCCAGGTATCGTAATGCCAGGCTTGCGTCGTTTGGTGATC 2800 Query 4430 CGTGATCTGCTGGCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTGAAGAG 4489 || ||| ||||||| || || || | |||||| ||| | |||||||||||||| ||| || Sbjct 2799 CGCGATTTGCTGGCGCAAGGGCGTATTTCCAGCAACTCGCTGGAATATGTGCGCGAAAAG 2740 Query 4490 GTGTTTACCAATAACGCCGACGTGGTGGCAGAGAAAGCACTGAAGCCAGAATCGGATATC 4549 |||||||||||| |||| | ||| ||| |||| | || || ||||| |||||| Sbjct 2739 CTGTTTACCAATAGCGCCAAGCCAGTGAAAGAAAAAGTGCAAAAACCTGAATCAGATATC 2680 Query 4550 ACCTTCAGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCATCACGT 4609 |||||| ||| | || || |||||||| ||||||||||| ||||| ||||||| |||| Sbjct 2679 ACCTTCGAAAAAGACACGGCCAACGTGAAAACCATCGCGCATTGGGTTCAGGCATAACGT 2620 Query 4610 CAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCATGTACGGC 4669 ||||||||||||||| |||| |||| || || || | ||||||||||| ||||||| Sbjct 2619 CAGGTGATGGATGATACGCCGGTGCTGCAATCTTATGTAAACAACCGCCTGCTGTACGGT 2560 Query 4670 CTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGGCGACGGTACCGGGGATAACCTGGAA 4729 |||| ||| ||||||| | |||||||| || ||| | ||| ||||||||||||| | Sbjct 2559 TTGGCGCTGGAGGAAGAAGCTCAGCTGCTCAATGGCAATGGTGCCGGGGATAACCTCAAG 2500 Query 4730 GGGCTGAACAAAGTGGCAACCGCCTATGACACCTCGCTGAATGCCACCGGCGACACCCGC 4789 ||| | || | || || || || || ||||| | | || |||| || |||||| Sbjct 2499 GGGATTAATACCGTTGCCACGGCTTACGACACTACCTTAAACGCCAAGGGTGACACCAAA 2440 Query 4790 GCTGACATTATCGCTCACGCTATTTATCAGGTGACCGAGTCTGAGTTCAGCGCTTCCGGT 4849 ||||||| ||||| ||||| | | ||||| || ||||| |||||||| ||||||||| Sbjct 2439 TCTGACATGATCGCCCACGCCGTCTTCCAGGTAACAGAGTCCGAGTTCAGTGCTTCCGGT 2380 Query 4850 ATCGTCCTGAACCCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAAGGCCGC 4909 ||| |||| || ||||| |||||||||||||||||| |||| ||||| || || ||| Sbjct 2379 ATCATCCTCAATCCGCGTGACTGGCACAACATCGCGCTGCTAAAAGATGGCGATGGGCGC 2320 Query 4910 TATATCTTCGGTGGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTT 4969 |||||||| || ||||| || || || |||| || ||||||||||| ||||| ||||| Sbjct 2319 TATATCTTTGGCGGTCCGCAAGCCTTTGCCAGCAATATCATGTGGGGGTTGCCTGTGGTG 2260 Query 4970 CCGACTAAGGCGCAGGCCGCCGGCACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAG 5029 || || ||| ||||| || ||||||||||| || || |||||| |||| ||||| Sbjct 2259 CCAACCCGGGCACAGGCACAAGGTACCTTTACCGTTGGGGGGTTCGATTTGGCATCACAA 2200 Query 5030 GTCTGGGATCGCATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTG 5089 |||||||||||||||||||| || | || || || |||||||| ||||||||||| ||| Sbjct 2199 GTCTGGGATCGCATGGATGCTACTATCGAGGTGAGTCGTGAAGATCGCGATAACTTTGTG 2140 Query 5090 AAAAACATGCTGACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCGCATTATCGCCCGACA 5149 ||||||||||| ||||||||||| || || |||||||| |||| ||||| || || ||| Sbjct 2139 AAAAACATGCTCACCATCCTGTGTGAGGATCGTCTGGCATTGGCACATTACCGACC-ACA 2081 Query 5150 -GCAATCATCAAGGGC 5164 ||||| || || ||| Sbjct 2080 GGCAATTATAAAAGGC 2065 Score = 473 bits (524), Expect = 3e-129 Identities = 588/802 (73%), Gaps = 5/802 (1%) Strand=Plus/Minus Query 3421 TTTTCGAAGGATATGCCTCTGTTTTTAATAACACCGATTCCGATGGCGACATCATTCTGC 3480 ||||||| || || ||||| || ||||| || | ||| || || ||||||||||| |||| Sbjct 3676 TTTTCGAGGGTTACGCCTCGGTCTTTAACAATATCGACTCAGACGGCGACATCATCCTGC 3617 Query 3481 CCGGGGCGTTTAAAAACGCGCTGGCGAACCAGACCCGAAAAGTGGCGATGTTTTTCAACC 3540 |||| || |||||| ||||| | | ||||| || || ||||||||||||||||||| Sbjct 3616 CCGGTGCCTTTAAAGGAGCGCTTGAAACGCAGACACGCAAGGTGGCGATGTTTTTCAACC 3557 Query 3541 ACAAGACGTGGGAGCTGCCGGTTGGTAAATGGGACAGTCTGGCCGAAGACGAAAAAGGGC 3600 || || ||||| | ||||| ||||| ||||| || |||||| ||||| | Sbjct 3556 ACCGCACCTGGGAAATCCCGGTGGGTAAGTGGGAAGCGCTACAGGAAGACACGAAAGGTC 3497 Query 3601 TCTACGTTCGCGGTCAACTTACCCCAGGACACAGCGGCGCCGCCGACCTGAAAGCAGCAA 3660 | | || || || || || || || || ||||| ||||| |||| ||||||| || | Sbjct 3496 TTTTTGTGCGTGGGCAGCTCACGCCGGGTCACAGTGGCGCAACCGATTTGAAAGCCGCTA 3437 Query 3661 TGCAGCACGGCACGGTTGAGGGTATGTCGGTTGGCTTTTCCGTTGCGAAAGACGATTACA 3720 ||||||||||||| || || || ||||| || ||||| | || ||||||||||||| Sbjct 3436 TGCAGCACGGCACAGTAGAAGGCATGTCCGTGGGCTTCTGGGTCAGCAAAGACGATTACA 3377 Query 3721 CCATCATTCCCACAGGCCGG---ATTTTTAAGAATATC-CAGGCTCTGCGCGAAATCAGC 3776 ||| | |||| || || || || || || || | || ||||| || ||||| Sbjct 3376 GCATTGTCCCCAGCGGTGGGCGCATCTTCAAAAACGTCTCTCGC-CTGCGAGAGGTCAGC 3318 Query 3777 GTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCATGAAAAGTGTCGATGGC 3836 || ||||| || || || || |||| ||| || | | ||||||||||||| || ||| Sbjct 3317 GTATGCACCTTTCCGGCTAATGAACTGGCGGGGGTATCTGCCATGAAAAGTGCTGAAGGC 3258 Query 3837 ATTGAAACGATCCGTGATGTGGAGAACTGGCTGAGGGATTCAGTCGGCCTCACCAAATCA 3896 |||||||| | ||||| ||||| ||||||||||||||||||||||| ||| ||| ||| Sbjct 3257 ATTGAAACCCTTCGTGACGTGGAAAACTGGCTGAGGGATTCAGTCGGTGTCAGCAAGTCA 3198 Query 3897 CAGGCAGTTGGGCTAATAGCCCGGTTTAAGTCAGCGATTCGGAGCGAGTCCGAGGGCGAC 3956 || || || ||||| || |||||||| ||||| || ||||||||||||||||| ||||| Sbjct 3197 CAAGCCGTAGGGCTTATTGCCCGGTTCAAGTCTGCCATTCGGAGCGAGTCCGAAAGCGAC 3138 Query 3957 GGAAACGAAGCACAAATAAACGCTCTGCTTCAGAGCATCAAATCTTTCCCTTCTAACTTA 4016 | ||| || | | || | ||| || | | ||||||| |||| | | | ||| Sbjct 3137 GAGAACAAAACCGACATTACCGCGCTTATCTCGCGCATCAACACTTTTTCAGCCACGTTA 3078 Query 4017 GGTAAATAATTATGTCTGAACTCGCTCTCATTCAAAAAGCTATCGAAGAATCCCAGCAGA 4076 || |||||| |||||| ||||| | | || ||||| ||| | |||| ||| ||| | Sbjct 3077 GGAAAATAACTATGTCCGAACTTGAACAAATCCAAAAGGCTCTGGAAGCATCACAGGCCA 3018 Query 4077 AAATGACCCAGCTTTTCGATGCGCAGAAAGCAGAAATCGAAAGCACAGGCCAGGTTTCCA 4136 || | || || || ||||| |||||||| |||||||||||||| |||||| | || | Sbjct 3017 AAGTACAGCAACTGTTTGATGCCCAGAAAGCGGAAATCGAAAGCACTGGCCAGATCTCTA 2958 Query 4137 AACAGTTGCAGTCCGACCTGATGAAAGTACAGGAAGAGCTGACCAAATCCGGCACTCGCC 4196 | || ||||| || ||| | | || || |||| || |||||||||| || | || Sbjct 2957 AGCAATTGCAATCTGACATCGTCAAGGTGCAGGCCGAAATGACCAAATCTGGTCAACACC 2898 Query 4197 TCTTCGATCTGGAACAGAAACT 4218 | || || |||||||||||||| Sbjct 2897 TGTTTGACCTGGAACAGAAACT 2876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127018309677828