Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq53 125 6e-24 seq308 113 4e-20 >seq53 Length=1361919 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| || | |||||| || || | || || ||||| || ||||||||||| Sbjct 1239987 CCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAG 1239928 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||| || | ||||| |||||| |||| | ||||||||| || || || Sbjct 1239927 AGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 1239868 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||| ||| || || |||||| | ||| || ||||| | ||| ||| Sbjct 1239867 ATACCTTCCTTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACC 1239808 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | |||||||| |||| |||||| |||||||| ||||| Sbjct 1239807 TCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 120 bits (132), Expect = 3e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||||||||| || | |||||| || ||||| | |||||||| | |||||| || Sbjct 1240201 CAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCCGTC 1240142 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||||| ||||| | || | |||||||||||| ||||| || || || || || Sbjct 1240141 TTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATC 1240082 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | ||||||| |||||| | ||||| || |||| || | || || || | || | | Sbjct 1240081 TTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGT-TCTACTTCCAAAGTAATGG 1240023 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| || |||| |||||| ||||| ||||||||| Sbjct 1240022 TTTTTCCAGTCAAAGTTTTAACAAAGATCTGCATG 1239988 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || |||||| || | || || ||||| || || |||||||| Sbjct 1241561 CCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAA 1241502 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| || || | ||||| ||||| |||| | |||||||||||| ||||| Sbjct 1241501 AGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 1241442 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || || || ||| ||||||| |||||| | ||||| || || | || | || || Sbjct 1241441 ATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGT-TCTAC 1241383 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | | |||||| |||| |||||||||||| || ||||| Sbjct 1241382 CTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| || |||||||| || |||||||| || |||||| ||| || Sbjct 1232552 ACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCTTCC 1232493 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| ||||| |||| | |||||||||||||||||| || || || |||||| Sbjct 1232492 AGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCTTGG 1232433 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| ||| || | ||| | || || | || | || || || | || | ||||| Sbjct 1232432 ATCTTTGCTTTTACATTTTCAATTGTATCAGATGGT-TCCACTTCTAAAGTGATTGTTTT 1232374 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || ||||| || || ||||| Sbjct 1232373 GCCAGTCAATGTCTTTACGAAGATTTGCAT 1232344 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || ||||| |||| |||||||| ||||||||||| |||||| | ||| || ||| Sbjct 1234447 AAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCATCT 1234388 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | ||||| |||||| |||| | ||||||||| || || || || || ||||| || Sbjct 1234387 TCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCC 1234328 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 || || ||| || | ||| | ||| || | |||||| || | || | ||| Sbjct 1234327 TGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATGGTT 1234268 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||||| |||||| || || || ||||| Sbjct 1234267 TTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 >seq308 Length=190705 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAAT-CGC 118569 ||| || || || | |||||| | || | || || ||||||||||| || |||| || Sbjct 86621 ACCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGA 86680 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || ||||| ||| || | |||||||||||| |||| | || || || ||||| | Sbjct 86681 TAAT-GTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTG 86739 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| ||||| ||| || ||| || | ||| | || || | | ||||| Sbjct 86740 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGA 86799 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || ||||| || || |||||||||||||||||||| Sbjct 86800 CCTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCAT 86848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821670654492