Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq53 105 8e-18 seq1 105 8e-18 seq164 100 3e-16 seq11 95.1 1e-14 seq293 91.5 2e-13 >seq53 Length=1361919 Score = 105 bits (116), Expect = 8e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 |||||||| ||||||||||| || |||||||| ||||||||||||| || || ||| Sbjct 1239750 AAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGC 1239691 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| |||||||| |||||||||||||| | || || || || | || | | ||| Sbjct 1239690 CCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGGATTCCTTCC 1239631 Query 43086 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144 || | | ||| | || | ||| | || | | || ||| | || || || | || Sbjct 1239630 TTAT-CTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGT 1239572 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || ||||| || || | ||||| || ||||| |||||||| Sbjct 1239571 GACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 1239530 Score = 102 bits (112), Expect = 9e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||||||| || ||||| ||||||||||||| || || ||| | || || Sbjct 1232552 ACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCTTCC 1232493 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || || || ||||| || || | |||||||| |||| || | | || ||||| | Sbjct 1232492 AGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCTTGG 1232433 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||| ||| | | | | || || | |||||| || | ||||| |||||| Sbjct 1232432 ATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCACTTCTAAAGTGATTGTTTTG 1232373 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATTTTTA 43188 || || | |||||||| |||||||||||||||| Sbjct 1232372 CCAGTCAATGTCTTTACGAAGATTTGCATTTTTA 1232339 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||| || ||||||||||| || |||||||| ||||||||||||| || || ||| Sbjct 1232789 AAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGC 1232730 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| |||| ||| ||||||||||| || | ||||| || || | || | | ||| Sbjct 1232729 CCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGGATTCCTTCC 1232670 Query 43086 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144 || | | ||| | || | || | || | | || ||| | || || || | || Sbjct 1232669 TTAT-CTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGT 1232611 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| |||||||| || | ||||| ||||| |||||||| Sbjct 1232610 GATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||||||||||||||| |||||||| | ||||||||| | ||||| || | Sbjct 1240204 ACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCC 1240145 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| |||| || || ||||| || || | |||||||| || | || | | || ||| Sbjct 1240144 GTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATAC-CTTCTT 1240086 Query 43088 GTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 | ||| |||||| || | || | | | || || | ||| || || | || | Sbjct 1240085 TATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAA 1240026 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || || | || || |||||||| ||||| Sbjct 1240025 TGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||||||||| || || || || |||||||| || | ||||| || | Sbjct 1240432 ACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACC 1240373 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || ||||| || ||||| || || | ||||||||||| | || | | || ||| Sbjct 1240372 GTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATAC-CTTCTT 1240314 Query 43088 GTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 | ||| |||||| | | || | | | || || | ||| || || | || | Sbjct 1240313 TATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAA 1240254 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||||||||| || | || || ||||| ||||||||| Sbjct 1240253 TGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCATT 1240216 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||||||||| || || || || ||||||||||| | ||||| || | Sbjct 1241550 ACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACC 1241491 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| |||| || || ||||| || || | |||||||| || | || | | || ||| Sbjct 1241490 GTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATAC-CTTCTT 1241432 Query 43088 GTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 | ||| |||||| || | || | | | || || | ||| || || | || | Sbjct 1241431 TATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAA 1241372 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| |||||| || | || |||||||||||||||||| Sbjct 1241371 TGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCATT 1241334 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||||||||| |||||||| || || || || || |||||||| | ||||| || Sbjct 1239978 AAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGA 1239919 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || || | || ||||||||||| || | ||||||||||| | || | | ||| Sbjct 1239918 CCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCC 1239859 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 || || ||| || ||| | | | || |||||| | || || || | || Sbjct 1239858 TTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTA 1239799 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||||| || | || || ||||| |||||||| Sbjct 1239798 ATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 82.4 bits (90), Expect = 9e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 || || |||||||| | || |||||||||||| || ||||| | ||||| || | Sbjct 1234450 CGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCA 1234391 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | || ||||||||||| || | ||||||||||| | || | | ||||| Sbjct 1234390 TCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTA 1234331 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || ||||| | | | || ||| | || || || | |||||| Sbjct 1234330 TCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATG 1234271 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || | || || || ||||||||||| Sbjct 1234270 GTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| || || ||||| | ||| || ||||| ||||| ||||| | | Sbjct 1241789 CCTCCGCGAAGACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGAC 1241730 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| ||| |||| || | || || ||||| || || | ||||| || |||| | Sbjct 1241729 AGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAA 1241670 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||| || ||||||| ||| | ||| | | || || || || || Sbjct 1241669 ATACCTTCCTTATCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACC 1241610 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | || || |||||||| || | || || ||||||||||||||| Sbjct 1241609 TCCAAAGTAATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 1241562 >seq1 Length=10097680 Score = 105 bits (116), Expect = 8e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| ||||| | |||||||||||||| || || || ||||||||||||| | Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||||||| | || || | || || |||||||| || | || ||||| || | || Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||| |||||| ||| |||| | |||| | | | |||||| | || || Sbjct 7547495 ATGCCCTCTTTGTCC-TGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 7547437 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || | || || |||||||| || || || || || || |||||||||||| Sbjct 7547436 TTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTT 7547385 >seq164 Length=561979 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 259727 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 259786 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 259787 TACTACCGAGGAT 259799 >seq11 Length=3762527 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3526337 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3526396 Query 60126 TACTACCGAGGA-TTGAAT 60143 ||||| |||||| |||||| Sbjct 3526397 TACTATCGAGGATTTGAAT 3526415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3527414 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3527355 Query 60126 TACTACCGAGGA-TTGAAT 60143 ||||| |||||| |||||| Sbjct 3527354 TACTATCGAGGATTTGAAT 3527336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 80/96 (83%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3580669 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3580728 Query 60126 TACTACCGAGGA-TTGAATATATAACTTGAATATTA 60160 ||||| |||||| |||||| || ||||||| || Sbjct 3580729 TACTATCGAGGACTTGAATTCAT--TTTGAATAGTA 3580762 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3670877 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 3670936 Query 60125 ATACTACCGAGGA-TTGAATATAT 60147 |||||| |||||| |||| | ||| Sbjct 3670937 ATACTATCGAGGACTTGAGTTTAT 3670960 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3672851 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3672910 Query 60126 TACTACCGAGGA-TTGAAT 60143 ||||| |||||| |||||| Sbjct 3672911 TACTATCGAGGATTTGAAT 3672929 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3722521 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3722580 Query 60126 TACTACCGAGGA-TTGAATATA 60146 ||||| |||||| |||||| || Sbjct 3722581 TACTATCGAGGACTTGAATTTA 3722602 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3669690 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3669749 Query 60126 TACTACCGAGG-ATTGA 60141 ||||| ||||| ||||| Sbjct 3669750 TACTATCGAGGAATTGA 3669766 >seq293 Length=307384 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 148477 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 148536 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 148537 TACTATCGAGGAT 148549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571805799114280