Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_002371.2 Length=41724 Score E Sequences producing significant alignments: (Bits) Value seq556 401 2e-107 >seq556 Length=23517 Score = 401 bits (444), Expect = 2e-107 Identities = 998/1493 (67%), Gaps = 38/1493 (3%) Strand=Plus/Minus Query 6787 AATGCCGATTCAACAACTCCCCATGATGAAGGGAATGGGTAAAGACTTCAAGAACGCCGA 6846 |||| |||| ||| | ||| |||| || || | ||||||| | | ||||||| Sbjct 8531 AATGGCGATAATGCAATTACCCCTGATAAAAGGTCTCGGTAAAGCGCGCGATGACGCCGA 8472 Query 6847 TTATATCGACTATCTGCCAGTGAATATGCTGGCAACACCCAAAGAAATCCTTAACAGCAG 6906 |||||||||| |||| || ||||||||||| || ||||| | | || ||| Sbjct 8471 TTATATCGACGCCTTGCCGGTCAATATGCTGGCTACGCCCAAGCCGGTATTGAATGCCAG 8412 Query 6907 CGGCTATCTCCGCTCATTCCCTGGCATTACCA--AACGTTATGATATGAACGGCGTATCG 6964 ||| ||||| ||||| || || || ||| || || | || | ||| || || Sbjct 8411 CGGTTATCTACGCTCGTTTCCCGGTATTGCCCGCAAAGCA--GAGGTCGCCGGGGTGTCC 8354 Query 6965 CGTGGAGTTGAGTACAACACCGCTCAGAATGCTGTTTATCGTGTT-TGTGGTGGCAAGCT 7023 || || ||| ||||||| ||| | | || | |||||||| | || | ||| | Sbjct 8353 CGAGGCGTTCAGTACAATACCCATGAAAAGACGGTTTATCGCGGGCTGGGAAATCAAT-T 8295 Query 7024 CTACAAAGG--AGAAAGCGAAGTTGGTGATGTTGCCGGAAGTGGTCGCGTATCA--ATGG 7079 |||||||| | ||| ||| | | ||| |||| |||| |||||| |||| |||| Sbjct 8294 ATACAAAGGCCATAAACCGA--TAGCGGATATTGCTGGAAAGGGTCGC--ATCAGCATGG 8239 Query 7080 CACATGGTCGGACATCA--CAGGCGGTAG--GCGTTAATGGCCAACTGGTCGAGTATCGC 7135 | | | || || || |||||||||| ||| | || || || || || Sbjct 8238 CGTTTAGCCG--CAACAGTCAGGCGGTAGCAGCGGCA--GGAAAAATGACGCTCTACCGT 8183 Query 7136 TATGATGGCACGGTTAAAACCGTCTCAAACTGGCCTGCAGACAGCGGATTCACGCAGTAT 7195 || ||||||||||| ||||| | ||||||||| ||||| || |||||| || Sbjct 8182 TACGATGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACGCAATAC 8123 Query 7196 GAGTTAGGTTCAGTGCGTGACATTACGCGCTTACGTGGGCGTTATGCGTGGTCAAAAGAC 7255 || | ||| | ||||| || || | || || || ||||||| |||| |||||| Sbjct 8122 GATATTGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGTAAAGAC 8063 Query 7256 GGCACTGATTCATGGTT--TATCACTGACCTCGAAGATGAATCGCATCCTGACCGCTACA 7313 ||||| ||| || || | |||| || | ||||||||||| || |||||||||||| Sbjct 8062 GGCACCGAT--ATTTTTGGTGTCACCGATTTGGAAGATGAATCTCACCCTGACCGCTACC 8005 Query 7314 GCGCACAATATCGCGCAGAGTCGCAGCCTGACGGCATCATCGGCATCGGAACATGGAGAG 7373 |||| | |||||||| || || || || |||||||| ||||| || | | ||| | | Sbjct 8004 GCGCGCTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCTGGCGCG 7945 Query 7374 ACTTCATCGTCTGCTTTGGTTCGTCAACGATAGAGTATTTCTCCCTGACAGGCGCAACCA 7433 | || || ||||||||||| |||| || || || ||||| |||||||| || || || Sbjct 7944 ATTTTATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGGCGGCCG 7885 Query 7434 CCGCTGGC--GCTGCGTTGTATGTCGCACAGCCATCGTTGATGGTACAGAAGGGCATTGC 7491 || ||| | || | |||| ||||||||| | | ||||| |||| |||||||| Sbjct 7884 ACG--GGCAATCCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGGCATTGC 7827 Query 7492 CGGAACATACTGTAAAACGCCGTTCGCTGATTCATACGCCTTTATCAGTCATCCGGCTAC 7551 ||| || |||| || || | | ||| ||| | | | | ||||| |||| ||| || Sbjct 7826 CGGGACCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGATCATCAGCCATCAGGCCAC 7767 Query 7552 TGGCGCACCTTCCGTCTACATCATCGGTTCAGG-GCAGGCATCGCCAATTGCGACCGCCA 7610 ||||| || || || ||| | || ||||| |||||| | | ||||| || |||| Sbjct 7766 CGGCGCGCCGTCGGTATACCTGAT-TAATCAGGCGCAGGCGACATCGATTGCCACGGCCA 7708 Query 7611 GTATTGAGAAAATTATCCGCTCATATACCGCTGAAGAAATGGCGACGGGTGTGATGGAGA 7670 || ||||||||| | ||| || || || ||| |||||| | || ||||| | Sbjct 7707 CCATCGAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCATGGAAA 7648 Query 7671 CTTTGCGCTTCGATTCTCATGAGCTTCTGATTATTCATCTCCCTCGCCATGTTCTGGTTT 7730 | | || ||||| || || | || |||| ||| | || || || || || || Sbjct 7647 CCGTCCGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACAGGTGTTGTGTT 7588 Query 7731 ACGACGCATCGTCCAGCCAGAACGGACCTCAGTGGTGTGTGCTGAAAACCGGGCTTTACG 7790 | ||||| || ||| ||||||||| || || ||| | |||||||||| || |||| Sbjct 7587 ATGACGCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCTTTTATC 7528 Query 7791 ATGATGTATATCGCGGCGTCGACTTCATGTACGAAGGAAACCAGATAACGTGCGGCGACA 7850 | | | ||||||||| |||| || |||| | | | || | || || ||||| | Sbjct 7527 ACGCTCCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTGGCGATA 7468 Query 7851 AATCAGAAGCGGTGGTCGGACAATTGCAATTCGACATCAGCAGC-CAGTACGACAAACAA 7909 || || || | |||| ||| | | || | |||| | || || || || |||| Sbjct 7467 AACACGATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAAAAACCG 7409 Query 7910 CAAGAACACCTACTGTTTACGCCCCTTTTCAAAGCAGATAACGCCAGATGCTTCGACCTT 7969 || || || | || | ||| || |||||||| |||||||| ||| | || || || Sbjct 7408 CAGGAGCATGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTTGATTTT 7349 Query 7970 GAGGTTGAATCATCCACTGGTGTTGCTCAATACGCTGACCGCCTGTTCCTGTCTGCAACA 8029 || | || |||| || || || || || ||| |||||||| ||||| || || || Sbjct 7348 GAACTGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCCGCCACC 7289 Query 8030 ACTGACGGCATCAATTACGGTCGTGAACAGATGATTGAGCAGAACGAGCCGTTTGTGTAC 8089 | |||||||| ||| || || |||||||||||| | || || | |||||||| ||| Sbjct 7288 GCCGACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTTGCGTAT 7229 Query 8090 GACAAGCGCGTTTTATGGAAACGTGTTGGGCGCATTCGTCGATTAATCGGATTCAAACTG 8149 ||| |||| || | ||| || ||||| ||| | | |||| || ||| | Sbjct 7228 GACCAGCGAATTCTCTGGCGGCGGGTTGGCTACATCAGAAAAAATGTCGGCTTTAAAGTA 7169 Query 8150 CGAGTAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTAAAAT 8209 || || |||||| ||| || || || || ||||| ||||| || | |||| || Sbjct 7168 CGGGTGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGATGGAATA---- 7113 Query 8210 ATGGCAGACCCGTCACTTAATAATCCTGTCGTTATTCAGGCCACCCGTCTCGA 8262 |||||| || | | |||||||| || | || || |||| || || || Sbjct 7112 ATGGCAAACGATACGCCAAATAATCCCGTGGAAATACACACCACGCGCCTTGA 7060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133392584703732