Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq53 129 9e-25 seq308 89.7 8e-13 >seq53 Length=1361919 Score = 129 bits (142), Expect = 9e-25 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | || |||||||| || |||||||| || || ||| ||||| | Sbjct 1240217 TTCCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCG 1240158 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | || || ||||||||||| |||||||||||||| | |||||||| |||| Sbjct 1240157 AAAGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAG 1240098 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||||||||| Sbjct 1240097 GAATACCTTCTTTATCTTG 1240079 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| ||||| |||||||| |||||| ||||| |||||||| | | || ||| Sbjct 1241543 ACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACCGTCTTCT 1241484 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||| ||||| | |||||||| |||||||| |||||||||||||| Sbjct 1241483 AATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTG 1241425 Score = 107 bits (118), Expect = 3e-18 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | || |||||||| ||||| |||||||| |||||| || || | Sbjct 1240445 TTCCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCG 1240386 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | | || || | ||||| |||||||| ||||| | ||||| || |||| Sbjct 1240385 AGAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 1240326 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| |||||||||||||| |||||| || ||||| Sbjct 1240325 GAATACCTTCTTTATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTA 1240266 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 | || | || || ||||| || || || ||||||| |||||||||||| Sbjct 1240265 CCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCATT 1240216 >seq308 Length=190705 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || || | |||||| || |||||||| ||||||||||| || | || | | ||| Sbjct 86637 AACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGATAATGTGCGACCATCT 86696 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || |||||||||||||| || ||||||| ||| || || || |||||||| ||||| || Sbjct 86697 TCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGAATTCCCTCTTTGTCC 86756 Query 146186 TG 146187 || Sbjct 86757 TG 86758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743511055473920