Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq184 269 2e-67 >seq184 Length=525875 Score = 269 bits (298), Expect = 2e-67 Identities = 501/726 (69%), Gaps = 12/726 (2%) Strand=Plus/Minus Query 16050 CCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGT 16109 ||||||| || | || | |||||| ||| ||||||| || || ||| ||| | Sbjct 28985 CCAATTCTAATAGCAAACGATCCGCTACATATTCTATGTATTGACACATACTTTCATTAT 28926 Query 16110 TCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCG 16169 |||| || ||||| || || || | |||||||| | ||| | ||||| || ||||| | Sbjct 28925 TCATACCGATTAAATTGACTGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGG 28866 Query 16170 CTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTA---AT-AAGTGTTTA 16225 | || | ||||| || || | | | ||| || ||||| || || | |||| Sbjct 28865 CATCGGTTATTATTTCCAATA-TGCGTTCTTT---GGTCGGTTTTTGTATCAAATATTTA 28810 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 ||||||| | ||||| || ||||| || ||||| || | |||||| || || ||| Sbjct 28809 AACATTAAAACCGCAAATTCGCAATGTAAACCTTCATCGCGTGATATTAATTCATTAGAA 28750 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 ||||| ||||| ||||||| ||| ||||| |||| ||||||||| | ||||| ||| Sbjct 28749 AATGTTAGACCCGGCATTATTCCACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCA 28690 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 ||||||||||||||| || || ||||| || | | |||||||| | ||| Sbjct 28689 CTAAAGAATATACCTTCGACGGCAGCAAAAGCTATGACACGCTCACCAAAA-TTCGCCGA 28631 Query 16406 ttactttc-tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 | | |||||| | |||||| | ||||| | |||||| | ||| |||| Sbjct 28630 ACGCGATGATATCCAAGCTAAAGCCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTC 28571 Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524 || |||||||| | ||||| |||||| |||| ||| | || || || ||||| Sbjct 28570 AATGGCATTAAAAAGATAATCGCGTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAA 28511 Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584 |||||||||||| || || | ||| || || ||||| ||||||||||||||||| | ||| Sbjct 28510 ACTATACATTTCCGAGTGTACATTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGC 28451 Query 16585 TTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643 ||||| || ||| ||||| ||| |||| | ||| |||| || || ||||| || || | Sbjct 28450 TTCGGTTACTTGAACTTCTTGAG-AAAAACGTTCCACTAAATTCTCATTAACAATGCCGT 28392 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTT 16703 | || |||||||| || | | ||| |||||||| ||| | ||| | | | Sbjct 28391 CAGATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGACGTTCATCATCAGTTAATC 28332 Query 16704 TTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAA 16763 ||| | | || |||| | | ||| |||||||| | |||||||||||||| Sbjct 28331 GCTCCCAATGATCAAGATCTGCAGCGAGATCAACCTCTTCCGCCGTCCAAAAAGAAGCTT 28272 Query 16764 CAGCCT 16769 |||||| Sbjct 28271 CAGCCT 28266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462502454908600