Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq54 176 4e-39 >seq54 Length=1370671 Score = 176 bits (194), Expect = 4e-39 Identities = 387/572 (68%), Gaps = 20/572 (3%) Strand=Plus/Plus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || || || || || | ||||| ||||| ||| ||||||||||||| ||||| Sbjct 1326935 AAGAAGGTGACTTAGGACCCATTTATGGTTTTCAGTGGCGACATTTTGGAGCGCAATATA 1326994 Query 20273 ----TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATT 20328 ||| || ||| |||||| | |||| || || |||||| |||| | ||| Sbjct 1326995 GAACTTGTCACGAA----AATTATGGTACGGAAGGGGTCGACCAATTAAAAAACATCATT 1327050 Query 20329 AATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAA 20388 | ||| | || || || | || || | || ||||||| | | ||||| | | Sbjct 1327051 AGAACAATAACGACAAATCCTACAGATCGACGTATGATTTTATCCTCTTGGAATCCGGTA 1327110 Query 20389 GATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAA 20447 ||| | || ||||||||| || || |||||| |||| || |||||||| || || || Sbjct 1327111 GATATACCAAAAATGGCTTTACCACCCTGTCAT-TGCTTGGCTCAATTTTATGTGGCCAA 1327169 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 ||||||||||| || ||| | |||||||| || |||||||| ||||||| || || Sbjct 1327170 TAATGAATTGTGCTGCCAACTTTATCAACGTAGTGCAGATATGGGCTTGGGTGTCCCCTT 1327229 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAAC 20567 ||||| || ||||| || | ||| | |||||||||||| | || | | ||| | Sbjct 1327230 TAATATAGCCTCGTATGCCCTCTTAACGAACATGATTGCACATTTAACCGGCCTTAAACC 1327289 Query 20568 GGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTT 20627 || ||||| || ||||| | || || | ||||| ||| |||||||| |||| || Sbjct 1327290 AGGCGACTTTGTGCACACAACCGGTGATACCCATATATACAAAAATCATATTCAACCGTT 1327349 Query 20628 AAAATTACAGTTAACACGACAACC-AAAACAATTCCCAACTCTTCGCATTACTCGAACTG 20686 | | || ||||| || |||| | ||||||| | | || | ||| | | Sbjct 1327350 GACAGAGCAATTAACGCGTAAACCGCGTATGTTTCCCAAAT-TGATTATAAAACGAGCCG 1327408 Query 20687 TTAAAGATATTAACGATTTTAAAGCTGATGATTTTG----TGTTAGAAGGTTATAATCCC 20742 | || ||||| | ||||| ||| || ||||| | ||| ||| |||||||||| Sbjct 1327409 TGGAAAATATTGAGGATTTCAAACTGGAAGATTTCGAAATTGT--GAA--TTATAATCCC 1327464 Query 20743 CATAATTCAATTCCAATGGAAATGTCTGTTTA 20774 || ||||| ||||||||| | ||||| Sbjct 1327465 TATCCAAAAATTCAAATGGAAATAGCGGTTTA 1327496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399175967794195