Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq184 241 1e-58 seq150 82.4 7e-11 seq138 82.4 7e-11 >seq184 Length=525875 Score = 241 bits (266), Expect = 1e-58 Identities = 425/614 (69%), Gaps = 4/614 (1%) Strand=Plus/Minus Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082 ||||||||| || | |||||| | | || || |||||| |||| ||| |||||| Sbjct 28981 TTCTAATAGCAAACGATCCGCTACATATTCTATGTATTGACACATACTTTCATTATTCAT 28922 Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 14142 ||| |||| || || || | | || | |||||| ||||| || || || || Sbjct 28921 ACCGATTAAATTGACTGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGGCATC 28862 Query 14143 GTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 14202 | |||| || | || ||| || | || | | | | || |||||| ||||| Sbjct 28861 GGTTATTATTTCCAATATGCGTTCTTTGGTCGGTTTTTGTATCAAATATTTAAACATTAA 28802 Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTC-TACTAATAAGTTCGTTTGAAAATGTTA 14261 | |||||| || ||||| | || ||||| | | || ||| ||| || |||||||||| Sbjct 28801 AACCGCAAATTCGCAATGTAAACCTTCATCGCGTGATATTAA-TTCATTAGAAAATGTTA 28743 Query 14262 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGA 14321 || ||||| | ||| ||||| || | ||||||||| | ||| || ||| ||||| Sbjct 28742 GACCCGGCATTATTCCACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCACTAAAGA 28683 Query 14322 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14381 |||| || || || |||||||| ||||| | || || ||||| || | Sbjct 28682 ATATACCTTCGACGGCAGCAAAAGCTATGACACGCTCACCAAAATTCGCCGAACGCGATG 28623 Query 14382 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14441 ||||||| | ||||||||| | ||| ||||||| || ||| || ||||| |||| Sbjct 28622 ATATCCAAGCTAAAGCCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTCAATGGCAT 28563 Query 14442 TAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 |||| | || || ||||| | | || || |||| ||||||||||| ||||||| Sbjct 28562 TAAAAAGATAATCGCGTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAAACTATACA 28503 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 |||| ||||||| ||||| || ||||| |||||||||||||| || | |||||| | Sbjct 28502 TTTCCGAGTGTACATTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGCTTCGGTTA 28443 Query 14562 ATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 ||| || || |||| |||| | ||| | ||||| |||||||| || || ||| || Sbjct 28442 CTTGAACTTCTTGAG-AAAAACGTTCCACTAAATTCTCATTAACAATGCCGTCAGATGCC 28384 Query 14621 GCAAAAAATGCCAA 14634 |||||||| ||||| Sbjct 28383 GCAAAAAAAGCCAA 28370 >seq150 Length=562241 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 121521 TTATGTACCTGGAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAGATGATGGATC 121580 |||| |||||| |||||||| ||| | ||| ||||||| ||||||||| || | ||| Sbjct 103053 TTATCAACCTGGTAAAAGAGGCTGGATCAAGGTGAAGAAAGATTACTTATATCAAGGAAA 102994 Query 121581 CATGGCAGATTCTGCAGACTTAGTAGTTTTAGG 121613 ||||| ||| |||| || ||||||||||| || Sbjct 102993 AATGGCTGATACTGCTGATTTAGTAGTTTTGGG 102961 >seq138 Length=713973 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/146 (73%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 132201 GATCCCAAAAAGATGCATAATGGAACAATAGAATACACAAGTATAGATATGCATAAAGGT 132260 ||||| ||||| ||||||||||| |||||| |||| || | ||| ||| | ||| Sbjct 371653 GATCCGAAAAAAATGCATAATGGGACAATACAATATACCTCAAGAGACGCCCATCAGGGT 371712 Query 132261 GTATCCCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTATAATAAAATGGTTA 132320 || ||| | || |||||||||| |||||| | || ||| |||||| ||||||| Sbjct 371713 GT---TCCGACCAGAAGAGGAGATTTTGAAATTATGGGTTATAATATAATTGAATGGTTG 371769 Query 132321 GGTGGTAAATTGCCATGGGAAAATGA 132346 || | |||| ||||||| ||| || Sbjct 371770 GGAGTGGAATTACCATGGGTAAAAGA 371795 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/146 (73%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 132201 GATCCCAAAAAGATGCATAATGGAACAATAGAATACACAAGTATAGATATGCATAAAGGT 132260 ||||| ||||| ||||||||||| |||||| |||| || | ||| ||| | ||| Sbjct 376344 GATCCGAAAAAAATGCATAATGGGACAATACAATATACCTCAAGAGACGCCCATCAGGGT 376403 Query 132261 GTATCCCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTATAATAAAATGGTTA 132320 || ||| | || |||||||||| |||||| | || ||| |||||| ||||||| Sbjct 376404 GT---TCCGACCAGAAGAGGAGATTTTGAAATTATGGGTTATAATATAATTGAATGGTTG 376460 Query 132321 GGTGGTAAATTGCCATGGGAAAATGA 132346 || | |||| ||||||| ||| || Sbjct 376461 GGAGTGGAATTACCATGGGTAAAAGA 376486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482335645592680