Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq138 98.7 1e-15 seq148 86.0 9e-12 >seq138 Length=713973 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/192 (72%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 172361 CCATGGTAAAATACCAC--CAGACCACTCTATCATATTATAGCCTAGAATTTCTAAATCT 172418 ||||||||| | |||| | |||| || || |||||||| || | |||||| |||||| Sbjct 371787 CCATGGTAA--TTCCACTCCCAACCATTCAATTATATTATAACCCATAATTTCAAAATCT 371730 Query 172419 CCTCTTCTTGATTCAACACCTTGATGGCTATCTCTGCTTGTATATTTTAATGTACCATTA 172478 |||||||| | |||||| |||||| ||||| ||||||| || ||| |||||| Sbjct 371729 CCTCTTCTGGTCGGAACACCCTGATGGGCGTCTCTTGAGGTATATTGTATTGTCCCATTA 371670 Query 172479 TGTGCTTTTTTAGGATCTGGTTGATAAATGT----TACTATAACGAGAACATAATCCAAA 172534 || |||||| ||||| |||| | || | | | ||||| |||| |||||| | Sbjct 371669 TGCATTTTTTTCGGATCGGGTTTA-AAGTCTTTTGTCGTATAATGAGAGGCCAATCCATA 371611 Query 172535 ATCAACTAAATA 172546 ||| ||||| || Sbjct 371610 ATCCACTAAGTA 371599 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/192 (72%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 172361 CCATGGTAAAATACCAC--CAGACCACTCTATCATATTATAGCCTAGAATTTCTAAATCT 172418 ||||||||| | |||| | |||| || || |||||||| || | |||||| |||||| Sbjct 376478 CCATGGTAA--TTCCACTCCCAACCATTCAATTATATTATAACCCATAATTTCAAAATCT 376421 Query 172419 CCTCTTCTTGATTCAACACCTTGATGGCTATCTCTGCTTGTATATTTTAATGTACCATTA 172478 |||||||| | |||||| |||||| ||||| ||||||| || ||| |||||| Sbjct 376420 CCTCTTCTGGTCGGAACACCCTGATGGGCGTCTCTTGAGGTATATTGTATTGTCCCATTA 376361 Query 172479 TGTGCTTTTTTAGGATCTGGTTGATAAATGT----TACTATAACGAGAACATAATCCAAA 172534 || |||||| ||||| |||| | || | | | ||||| |||| |||||| | Sbjct 376360 TGCATTTTTTTCGGATCGGGTTTA-AAGTCTTTTGTCGTATAATGAGAGGCCAATCCATA 376302 Query 172535 ATCAACTAAATA 172546 ||| ||||| || Sbjct 376301 ATCCACTAAGTA 376290 >seq148 Length=545759 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 172361 CCATGGTAAAATACCACCAGACCACTCTATCATATTATAGCCTAGAATTTCTAAATCTCC 172420 ||||||||| | | || |||| || || |||||||| || | |||||| ||||| || Sbjct 276704 CCATGGTAATTCAACTCCCAACCATTCAATTATATTATAACCCAAAATTTCAAAATCGCC 276645 Query 172421 TCTTCTTGATTCAACACCTTGATGGCTATCTCTGCTTGTATATTTTAATGTACCATTATG 172480 ||| || | ||||||||||||| |||||| ||||||| || ||| ||||| | Sbjct 276644 TCTCCTGGTCAAAACACCTTGATGGGCGTCTCTGGAGGTATATTCTATTGTCCCATTTGG 276585 Query 172481 TGCTTTTTTAGGATCTGGTT 172500 | ||||| ||||| |||| Sbjct 276584 TATTTTTTGCGGATCGGGTT 276565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679800370330320