Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq53 104 2e-17 seq1 98.7 8e-16 seq308 89.7 4e-13 >seq53 Length=1361919 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| | ||||||||||||||| || ||||| || | || ||| | |||| Sbjct 1232555 AGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCT 1232496 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||||||| ||| |||| | | || ||||| || | ||||| || || Sbjct 1232495 TCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCT 1232436 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||| || || | | ||| || ||| || || ||| | ||||| | Sbjct 1232435 TGGATCT-TTGCTTTTACATTTTCAATTGTATCAGATGGTTCCACTTCTAAAGTGATTGT 1232377 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACTCT 18336 |||||| |||||||| ||||| || ||||||||||||| | ||| Sbjct 1232376 TTTGCCAGTCAATGTCTTTACGAAGATTTGCATTTTTAGAATCT 1232333 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||| || || | |||| || | || ||||||||||||||||| || || || |||| Sbjct 1241789 CCTCCGCGAAGACGTAAG-ACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGA 1241731 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||||||||||||| ||| |||| | | |||||||| | Sbjct 1241730 CAGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGA 1241671 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||||||||| |||| |||| || ||| | | | ||| || ||||| Sbjct 1241670 AATACCTTCCTTATCTTGGATTT-TTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTA 1241612 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || || ||||||| ||||| ||||| ||||| ||||||||| Sbjct 1241611 CCTCCAAAGTAATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 1241562 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||| || |||||||| || | | || || ||||||||||||||| || Sbjct 1239957 GTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGACCATCTTCCAATTGTTTACCA 1239898 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || |||| | | || || || ||| | ||||||||||| || | | || || Sbjct 1239897 GCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATCT-TAGCTTT 1239839 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | |||||||||| ||||| || | || ||| ||||||| ||||| || Sbjct 1239838 AACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTAATGGTTTTGCCAGTCAAAGT 1239779 Query 18308 TTTTACAAAAATTTGCAT 18325 ||| |||||||||||||| Sbjct 1239778 TTTAACAAAAATTTGCAT 1239761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| || || || || || ||||||||||| || |||| | || | || Sbjct 1234448 TAAG-ACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCAT 1234390 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 ||||||||||||| || || |||| | | || || || ||| | |||||||||| Sbjct 1234389 CTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTAT 1234330 Query 18232 CGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 | || | | || ||||| | | ||| || || |||||| ||| | |||||| Sbjct 1234329 CCTGGATCT-TAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATG 1234271 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||||| ||||| || || |||||||| Sbjct 1234270 GTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 >seq1 Length=10097680 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||||| || | ||| |||||||| || || ||||| || | || || | ||| Sbjct 7547601 AAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGACAAAGTCCGCCCATC 7547542 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||||||||||||| || |||| | | ||| ||||| || | ||| || || || Sbjct 7547541 TTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCTTTGTC 7547482 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| |||||| | | ||| |||||| ||||| ||| | || || | Sbjct 7547481 CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATTGT 7547422 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||| || | ||||| || ||||||||||||||| Sbjct 7547421 TTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTT 7547385 >seq308 Length=190705 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || |||||||||||||| || || || | | ||| || ||||||||||||||| || Sbjct 86652 GTGGATTCTTTTTGAATATTATAATCCGATAATGTGCGACCATCTTCCAATTGTTTTCCA 86711 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || |||| | || |||||| || || | || || || || ||| | | || || Sbjct 86712 GCGAAGATCAATCGTTGTTGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCT-TGGCTTT 86770 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||| ||| ||||||| |||| || ||| | ||||| || | || Sbjct 86771 CACATTTTCAATAGTATCAGAGGGCTCGACCTCAAGAGTAATGGTCTTGCCCGTAAGGGT 86830 Query 18308 TTTTACAAAAATTTGCATTTT 18328 |||||||||||| ||||| || Sbjct 86831 TTTTACAAAAATCTGCATATT 86851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379336367005995