Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq54 116 7e-21 seq184 102 2e-16 >seq54 Length=1370671 Score = 116 bits (128), Expect = 7e-21 Identities = 351/532 (66%), Gaps = 15/532 (3%) Strand=Plus/Plus Query 35175 TATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCAGTT-CTC 35233 |||| || ||||| | ||| || | ||| | | || ||| || ||||| || || Sbjct 1326722 TATCAATATTTGGTGCGCAATTGCGTTTCAATTTGCG---CGAAAC-ATTCCCTTTGCTT 1326777 Query 35234 ACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGC 35293 ||||| || ||| | || ||| | | || || ||||| || | ||||| || || ||| Sbjct 1326778 ACTACGAAAAAAGTATTTTGGCGTGCTGTAGTAGAAGAGCTATTATGGTTTATAAGCGGC 1326837 Query 35294 AATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGG--GT 35351 | || || ||||||| | || || || || || || ||| | | |||| | || Sbjct 1326838 AGCACTGATGCCAAAGTGCTACAAAATAAAAACATCCATATATGGGATGGTAATAGTAGT 1326897 Query 35352 CGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCG 35411 |||| |||||||||| || | || || | ||| | | ||| || || || |||||| Sbjct 1326898 CGCG--AATTTTTGGATAGATGCGGTTTTAATGATCGCGAAGAAGGTGACTTAGGACCCA 1326955 Query 35412 TATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATA 35471 | || || || || ||||| |||||||| || ||||| || ||| ||||| Sbjct 1326956 TTTATGGTTTTCAGTGGCGACATTTTGGAGCGCAATATAGAACTTGTCACGAAAATTATG 1327015 Query 35472 CT--GGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGA 35529 | |||| ||| | || ||||| || || | | || | | |||||| Sbjct 1327016 GTACGGAAGGGG--TCGACCAATTAAAAAACATCATTAGAACAATAACGACAAATCCTAC 1327073 Query 35530 TGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCC 35589 ||| || | |||||| | | | |||||||| | ||| | | |||||| | || Sbjct 1327074 AGATCGACGTATGATTTTATCCTCTTGGAATCCGGTAGATATACCAAAAATGGCTTTACC 1327133 Query 35590 TCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGT 35648 || || || || | ||||||||||||||||| ||| ||||||| ||||| | | Sbjct 1327134 ACCCTGTCA-TTGCTTGGCTCAATTTTATGTGGCCAATAATGAATTGTGCTGCCAACTTT 1327192 Query 35649 ATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATA 35700 |||| || || | |||| | || ||||| || ||||| ||||| || || || Sbjct 1327193 ATCAACGTAGTGCAGATATGGGCTTGGGTGTCCCCTTTAATATAGCCTCGTA 1327244 >seq184 Length=525875 Score = 102 bits (112), Expect = 2e-16 Identities = 215/316 (68%), Gaps = 11/316 (3%) Strand=Plus/Plus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 || |||||||| || ||||| || ||||||||||| || || || || || ||| | Sbjct 28658 GCTTTTGCTGCCGTCGAAGGTATATTCTTTAGTGGAAGTTTTGCTTCGATATTTTGGCTT 28717 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | || || |||| ||||| || | || ||||| || || || | || ||| Sbjct 28718 AAGAAACGTGGAATAATGCCGGGTCTAACATTTTCTAATGAATTAATATCACGCGATGAA 28777 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTT--GATACCCCAT 102098 ||| | ||| |||| ||||| | |||| ||| | |||| | | | || | Sbjct 28778 GGTTTACATTGCGAATTTGCGGTTTTAATGTTTAAATA----TTTGATACAAAAACCGAC 28833 Query 102099 CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCA 102158 ||| |||| | || | ||||| | || || ||||| ||||||| | |||||||| | Sbjct 28834 CAA-AGAACGCATATTGGAAATAATAACCGATGCCGTTAAAATTGAAAAGGAATTTCTGA 28892 Query 102159 CAGTTTCCCTGCCTGTTAAATTAGTGGGAATGA--ACTGCAAGTTGATGAGCCAGTACAT 102216 ||| | || || || || ||| | || |||| | || |||| ||| | || ||||| Sbjct 28893 CAGAAGCTCTACCAGTCAATTTAATCGGTATGAATAATGAAAGT--ATGTGTCAATACAT 28950 Query 102217 TGAATTTGTGGCAGAT 102232 |||| ||| || ||| Sbjct 28951 AGAATATGTAGCGGAT 28966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989563066896705