Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq595 150 5e-32 seq731 95.1 3e-15 >seq595 Length=6865 Score = 150 bits (166), Expect = 5e-32 Identities = 196/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 33670 GCTTCATTTCGTGGCGTTCCGTTTTCGGTGGAAAGCGACGAGGGTTCGTTCGGACGCCGC 33729 || || ||||| ||||| |||||| ||||||| ||||||||| | |||||||| || Sbjct 4609 GCATCCTTTCGCGGCGTGCCGTTTCAGGTGGAAGACGACGAGGGGACTTTCGGACGGCGG 4550 Query 33730 GTTCAGGTCCATGAATACCCAAACCGTGACAAACCGTACACGGAAGATCTCGGGCGTGCC 33789 || || || ||||||||||| ||| | || || || || || |||||||| || || ||| Sbjct 4549 GTACAAGTTCATGAATACCCCAACAGGGATAAGCCCTATACCGAAGATCTGGGACGCGCC 4490 Query 33790 ACGCGACGGCTGACGATTAATGCGTATCTCGTTGGTGATGATTACGCAGAGCAGCGCGAC 33849 || ||||| | || || || || ||||| | ||| |||||| | ||| | | || Sbjct 4489 ACACGACGATTTACTATCAACGCCTATCTGATCGGTAATGATTTCTTCGAGGACAGAGAT 4430 Query 33850 AGGCTGATTACCGCGATTGAAACCGCCGGGCCGGGGACACTGATCCATCCGCAGTTCGGT 33909 | || ||| || ||||| || | |||||||| || ||| | ||||| | | |||| Sbjct 4429 CGTCTCATTGTGGCTATTGATACGCCAGGGCCGGGAACGCTGGTACATCCCTACTACGGT 4370 Query 33910 GAAATGCAGGGCTGTATTGACGGACAGGTGA 33940 ||||| | |||||||||||| | |||| Sbjct 4369 GAAATAGCTGTCTGTATTGACGGTGAAGTGA 4339 Score = 132 bits (146), Expect = 1e-26 Identities = 747/1167 (64%), Gaps = 67/1167 (6%) Strand=Plus/Minus Query 36631 CGTGCTGTGATTATTTCGCTTTTTACCTGGCGGCGTGCAGGGCGTGATGATGATGCACCG 36690 ||||| |||||||| ||||| || |||||||| ||||| | || |||||||| ||||| Sbjct 1435 CGTGCCGTGATTATCTCGCTATTCACCTGGCGACGTGCTGAGCCGGATGATGA--CACCG 1378 Query 36691 CAGATA-----TTTGGATGGTGGGGGGATACCTGGCCTACGGTTCAGAATGATCGCACGG 36745 ||| || ||||||||||| ||||||||||| || || || || || || | | Sbjct 1377 ---ATACGCCGTTCGGATGGTGGGGTGATACCTGGCCGACCGTACAAAACGACCGGATTG 1321 Query 36746 GGTCGCGTCTGTATCTGTTGCGACGCAGCAAGCTGACAAATAAAACCCCGCAGCTTGCCA 36805 | || || || | |||| |||||||| | || || | || |||| || | Sbjct 1320 GTTCTCGATTGCACTTGTTAAAACGCAGCACTTTAACTAACCAGACAGCGCAAAAGGCGA 1261 Query 36806 GAGATTATGCCCGTGAAGCGCTGGCGTGGATGGTGGAGGATGGTGTT--GCTTCCCGTCT 36863 ||| ||| | | | ||||| | |||||| || |||||| | ||||| || Sbjct 1260 AAGAATATATCTCTCAGGCGCTCACATGGATGACAGACGATGGTATCACGCTTCAGGT-- 1203 Query 36864 TGATATTAACGCTGTCAGGACCGGGACAGAC-TCGCTGGC--ACTTGCCATTACCATTTA 36920 ||||||| | | || || | ||||| ||| | | | |||| | | ||| Sbjct 1202 TGATATTGAGGTAGT----AC--GCTCAGACATCGATAGATTAATTGCAACTGTCAT--- 1152 Query 36921 CCAG-CGTGAC--GGCAATAT--TCACAAC-ATTATTTTTGATGATATCTGGAGTGAACT 36974 || | ||| || | | ||| | | ||| || | | | || | ||||| | | | Sbjct 1151 CCTGACGTTACCTGACCATAACATAAAAACGATGACCATCAACAATTTGTGGAGCGTAAT 1092 Query 36975 GAATGGCTGACAGTCAGTTTTATCGCCCCGG--CCTCCCGCAACTTATTTCTATGATCCG 37032 ||| | || | ||||| |||| || | ||| || ||||| || | || || Sbjct 1091 CCATG-CAAACTAGCGGTTTT-TCGCGCCCGACCCTGCCACAACTGATAGACACCATTCG 1034 Query 37033 GAGCGATTTATTAACCCGCTTTGAGCAGGATACGCTGCTTCGTCGTATGGATGCGGAAGT 37092 | ||||| | || || ||| | | |||| | | || || | ||||| ||||| Sbjct 1033 CGGTGATTTGCTCACACGATTTAATGAAGATAGCGTATTACGCCGCCTCGATGCCGAAGT 974 Query 37093 GTACGCCCGTGTACAGGCTGCAGCTGTGCACACGTTGTACGGGTATATCGATTATCTTGC 37152 |||||| | |||||||| || ||| | || || | ||||| |||||||||||| | || Sbjct 973 GTACGCAAGAGTACAGGCCGCCGCTATTCATACCCTATACGGCTATATCGATTATTTAGC 914 Query 37153 CAGAAATCTGTTGCCGGACATGTGTGATGAAGACTGGCTGTACCGGCACGCCAGAATCAA 37212 | ||| | |||||||| | |||||||| ||| || ||| |||| | ||||| Sbjct 913 GCGTAATATCTTGCCGGATTTAGCCGATGAAGATTGGTTGACCCGACACGGTAATATCAA 854 Query 37213 ACGCTGCCCGCGAAAAGATGCGGTGGCAGCCCGGGGATTTGTGCGCTGGGATGGCGTAGA 37272 || || || ||||||| || ||| | ||||||| || ||||| || ||| | Sbjct 853 GCGTTGTCCACGAAAAGGGGCAACCAAAGCGAGTTGATTTGTTCGGTGGGAGGGTGTACA 794 Query 37273 GGGGACGCCGGTATTG---CCAGCGGGAACGCAGATCCAGCGTGATGATCAGGTGACCTT 37329 | || | ||| | || | | | | || || ||||||||| ||| | | Sbjct 793 AA--ATGCAG-TATCGATACCTTCTGATTCTGAAATACACCGTGATGAT--GGTCAAATA 739 Query 37330 --CACCACGACGGCGACGGTGACCGCAGCCGATGGTCTTCTCCGGGTGCCTGTTGTGGCA 37387 |||||| || || | |||| | ||| | || || ||||| || || ||| Sbjct 738 TACACCACAAC----ACCAT-----CAGCAAAGGGTGTACTTCGCGTGCCCGTCGTTGCA 688 Query 37388 GACGAACCGGGATC-GGCGGGGAATACGGATGATGGTATTGCCATGCAGCTGGGAACACC 37446 | | | | | || ||| || ||| || || || || || | | || | || || Sbjct 687 AAA-AGCAGCGGTCAGGCTGGCAATTGTGAGGACGGCATCGCGCTACGACTTGCTACGCC 629 Query 37447 CGTCAGTGGTCTGCCGTCCACAGGATACGCTGACACCATTACAGACGGTGAA--GATATT 37504 | |||| | | || || || || || || | ||| | ||| | ||| |||||| Sbjct 628 TATTTCTGGTTTATCTTCGACCGGTTATGCCGATAACATCAG-GACAG-GAACCGATATT 571 Query 37505 GAAAATCTGGAAATATGGCGTGCCCGCGTTATGGAACGTTATTACTACATTCCACAGGGG 37564 ||| | ||||| | ||||| || | |||| || | ||| | | ||||| || Sbjct 570 GAAGACCTGGATAGCTGGCGACAACGTATCATGGCGCGCTGGTACGATACGCCACAAGGC 511 Query 37565 GGCGCAGACCCTGATTATGTTATCTGGGCGAAAGAAGTTCAGGGTATTAACCGTGCATGG 37624 || || || |||||||||| ||||||||||||||| | ||| || | || |||||| Sbjct 510 GGTGCGGATAGTGATTATGTTCGCTGGGCGAAAGAAGTCCTGGGCATAAGTCGCGCATGG 451 Query 37625 ACTTTCAGACACTGGAAAGGTATTGGAACGGTTGGCGTGATGGTGGCGACAAACGATCCT 37684 || |||| || ||||| || |||||||| || |||||||||| | ||| Sbjct 450 ACACATCGACATAAAAACGGTATCGGCACGGTTGGGGTCATGGTGGCGAGTGATGATGTA 391 Query 37685 GAACACCCGGCCC---CGGATGAAAGCGTGATTAACGCAGTCAGGGACCACATCCTTCCT 37741 || || || |||| | | |||| | | | || |||||| || || || | || Sbjct 390 GACCATCCTGCCCCCACACAGGAAATCTTAACCAA---AGTCAGAGAGCATATATTACCC 334 Query 37742 CTGGCACCTGTTGCCGGAAGCGGATTG 37768 || || |||||| ||||||| || ||| Sbjct 333 CTTGCCCCTGTTACCGGAAGTGGCTTG 307 Score = 105 bits (116), Expect = 2e-18 Identities = 299/451 (66%), Gaps = 15/451 (3%) Strand=Plus/Minus Query 34834 CGAACGCCAGCGGAAGTTCTGCCTGCGCTTGTTCTGGCTGCGTCATGGTACGACGATGCG 34893 || ||||||| || || || || || || |||||||| || ||||| ||| ||||| Sbjct 3466 CGTACGCCAGAGGCGGTGCTACCCGCACTGGTTCTGGCCGCCAAGTGGTATGACAATGCG 3407 Query 34894 TCCCGTGAAATTGATATCCTGGATCGAAATGCCATCTCCCATCCGGGCTTTGTTCCGGTC 34953 | || |||| |||||| || |||||| | ||||| |||||| | || || Sbjct 3406 GCACGGGAAACCGATATCACCAGCCGGAATGCCGTTAATCATCCTGGCTTTATGCCAGTT 3347 Query 34954 AGGGCATTAAGGGTACCCGTCAGATGAATAATACCGTTTTACTTCGGGTTTCCGGTCGCG 35013 | | || || ||||||| |||||| |||| ||| || | || || ||| |||| Sbjct 3346 AAACCTTTGAGAGTACCCGCAAGATGAGTAATCACGTGATATTGCGCGTCAACGGGCGCG 3287 Query 35014 AATGGGGCGGCTGGACATCCGTCCGTATCAGTGCGGGCATTAACCGTATTGCCCGGGATT 35073 ||||||| ||||||||| || | || || ||||| | || | | || |||| Sbjct 3286 AATGGGGGGGCTGGACACGGGTACAGATTTCAGCAGGCATAGAGCGACTCTCACGCGATT 3227 Query 35074 TTAATGTTGCCATTACCACCCGCTGGCCCG--GCAGCCGG--GATTA-----TCAGCCCC 35124 | ||||| | || ||| || |||| | | | | || || || |||||| Sbjct 3226 TCAATGTAGAAATCACCCGCCAATGGCTTGGTGAATCAGGAAGAGTACCGTTACAGCCCA 3167 Query 35125 GGATAAAAAATGGTGAGCTGGTTGAAGTGCTTATCGGTGATGAGCCCGTGCTCACCGGAT 35184 | || ||||| ||||| || || ||||| || |||||| | || || || ||||| | Sbjct 3166 GAATTAAAAAAGGTGAACTTGTCGAAGTCCTCATCGGTCAGGATAAAGTCCTAACCGGCT 3107 Query 35185 --ATGTGGAGGCACTACCGCTTCGTTATGACGCCAGCAGCGT-CAGCATGGGAATTGTCG 35241 || || || ||| |||| | |||||||| || | || | ||| ||| | || | Sbjct 3106 GGAT-TGAAGCCAC-ACCGATACGTTATGATGCTAAAAGTATCCAGGTTGGTATCAGT-G 3050 Query 35242 GGCGAAGCAAAACAGCCGATCTGGTTGACTG 35272 | || || |||||||| ||| | | ||||| Sbjct 3049 GTCGTAGTAAAACAGCAGATTTAATCGACTG 3019 >seq731 Length=3676 Score = 95.1 bits (104), Expect = 3e-15 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 28123 TTTACACGTCGACTTTAAACAACCAAAGGAGCTGGAGTTTAATCGCGCCCGTTTGCGTCG 28182 ||||||||| || ||| | ||||| | ||| ||| || || ||||| | ||||| || Sbjct 1282 TTTACACGTTGATTTTCAGCAACCGGATGAGTTGGTTTTCAACCGCGCGAGGTTGCGACG 1223 Query 28183 GGCGTTTGTGCAAATCGGGCGCGTTTACATGCGTGACGCCAGACGTCTGGTGATTAAACG 28242 |||||||||| ||||| | || | ||||| || || |||| ||||||| || || Sbjct 1222 GGCGTTTGTGACGATCGGCCAGGTGCATATGCGCGATGCACGACGCTTGGTGATGAAGCG 1163 Query 28243 CGGGCGTTCTGGCCCGGGAGAGAACCCGGGGTATCAGACCGGGCGTCTGGCCCGCTCCAT 28302 ||| | | |||||| ||||||| || || |||||| |||| |||||||| Sbjct 1162 CGGTAAATTAGCAGGGGGAGATAACCCGGCATACCACACCGGGAAATTGGCTCGCTCCAT 1103 Query 28303 CGGTTAT 28309 |||||| Sbjct 1102 TGGTTAT 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136115731313694