Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq595 150 4e-32 seq731 118 3e-22 >seq595 Length=6865 Score = 150 bits (166), Expect = 4e-32 Identities = 323/481 (67%), Gaps = 4/481 (1%) Strand=Plus/Minus Query 8180 TTTGATTATATCGGTCTGCCGTTCAACGACACGGCCTCC--GTTAACACGCTGGTGACCG 8237 ||||||| |||||| || || ||| ||| || | ||| || || | | | | || Sbjct 6619 TTTGATTTTATCGGACTCCCCTTCGGCGATACTGACTCTTTGTAAAAAATCAGCGG--CG 6562 Query 8238 AGATGAACGATACCAGCGGTCGCTGGAGCTATGCGCGTCAGCTGTATGGTCATGTGTATA 8297 ||||||| ||||||||||| ||||||| | || || |||| || ||||| || | Sbjct 6561 AGATGAATGATACCAGCGGGCGCTGGAATCCTTATCGGCAATTGTACGGGCATGTCTACA 6502 Query 8298 CGGCAAAGACCGGCACACTGTCAGAACTGGTGAACGCAGGTGACCAGTTTAACCAGCAGC 8357 ||||||| || ||||| | | ||||| | | |||| |||||| | | | Sbjct 6501 CGGCAAAAACAGGCACGGTCGCTGAACTTATCGCCTTTGGTGCGGCGTTTAATGATCCAC 6442 Query 8358 ACATCACCCTGGCGGGGTACGAAAAAGAGACCCAGACGCCTGCCGACGAGCTGGCGGCAA 8417 || |||| | ||||| ||||||| | |||||| | || ||||||| || Sbjct 6441 ACCTCACTATCGCGGGATACGAAACCACTATCCAGACCGCATTAGATGAGCTGGTTGCGG 6382 Query 8418 GCCGTACCGCCCGTGCAGCGGTGTTTATCCGCAACGATCCGGCACGTCCCACGCAGACCG 8477 || || || ||| ||||| | ||||||||||||||| | || || || | || Sbjct 6381 CTCGGCTGGCGCGAAGTGCGATGTTTTTGCGCAACGATCCGGCAAGGCCAACACACAGCG 6322 Query 8478 GTGAGCTGGTGGGTATGCTGCCTGCGCCGAAGGGGAAACGGTTCACGATGACCGAGCAGC 8537 | ||| | || | | || || ||| ||| |||| ||||| |||| ||||||| Sbjct 6321 GCGAGTTAAACGGCGTATTACCCGCCCCGGCGGGTCAACGCTTCACCTTGACGGAGCAGC 6262 Query 8538 AGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTCGAAAGCGGGGTGCTGCGCATTC 8597 | | || || | || ||| | || || || |||| ||| | || | |||| |||| Sbjct 6261 AATCGCTCCTTTTTCGTGGTATCGCCACAGCCAATGTAGAAGGTGGCGCATTGCGTATTC 6202 Query 8598 AGCGTGATGTCACCACGTACAGGAAAAATGCTTACGGGGTTGCGGATAACAGCTACCTCG 8657 | ||||| ||||| || |||| |||||| |||||||||||| ||||| ||||| || | Sbjct 6201 AACGTGACGTCACAACCTACAAGAAAAACAGTTACGGGGTTGCCGATAATAGCTATCTGG 6142 Query 8658 A 8658 | Sbjct 6141 A 6141 Score = 118 bits (130), Expect = 3e-22 Identities = 679/1067 (64%), Gaps = 31/1067 (3%) Strand=Plus/Minus Query 12852 CGCACACCGGATGAGGTTTTACCCGCGCTGGTGCTGGCGGCGACCTGGTTTGATAACGCG 12911 || || || || | ||| ||||||| ||||| ||||| || | |||| ||| || ||| Sbjct 3466 CGTACGCCAGAGGCGGTGCTACCCGCACTGGTTCTGGCCGCCAAGTGGTATGACAATGCG 3407 Query 12912 GCGCGTGACGCGGACATTATCCGGCGTAATGCCATTACGCATCCCGGCTTTGTGCCGGTG 12971 || || || | || || | | | || |||||| ||| ||||| |||||| |||| || Sbjct 3406 GCACGGGAAACCGATATCACCAGCCGGAATGCCGTTAATCATCCTGGCTTTATGCCAGTT 3347 Query 12972 ATCCCTCTGAAGGTGCCAGTGCAATGAACGACAATGTCACGCTACGGGTAAATGGCCGGG 13031 | ||| ||| || || | |||| | | || | | || || || || || | Sbjct 3346 AAACCTTTGAGAGTACCCGCAAGATGAGTAATCACGTGATATTGCGCGTCAACGGGCGCG 3287 Query 13032 AGTGGAATGGCTGGACATCGGTGCGCATCGGTGCCGGTATTGAACGACTGGCGCGGGATT 13091 | ||| ||||||||| ||| | || || || || || ||||| | || |||| Sbjct 3286 AATGGGGGGGCTGGACACGGGTACAGATTTCAGCAGGCATAGAGCGACTCTCACGCGATT 3227 Query 13092 TCAGTGTGGATATCACCCGCCAGTGGCCGGGAG-ATGAGG-GTATTACCACGCTTCAGCC 13149 ||| ||| || ||||||||||| |||| || | || ||| | ||| || | ||||| Sbjct 3226 TCAATGTAGAAATCACCCGCCAATGGCTTGGTGAATCAGGAAGAGTAC--CGTTACAGCC 3169 Query 13150 GCGCATTAAAAACGGTTCAAAAGTGGAAGTGCTGATTGGTGATGAGCTGGTGATCACCGG 13209 | |||||||| ||| | || ||||| || || ||| | || || | ||||| Sbjct 3168 CAGAATTAAAAAAGGTGAACTTGTCGAAGTCCTCATCGGTCAGGATAAAGTCCTAACCGG 3109 Query 13210 CTGGGTGGAGGCGACGCCCGTTCGTTACGATGC---CCGT-TCGGTCAGCACCGGTATTG 13265 |||| | || || || || | ||||| ||||| || || ||| ||||| Sbjct 3108 CTGGATTGAAGCCACACCGATACGTTATGATGCTAAAAGTATC---CAG-GTTGGTATCA 3053 Query 13266 CCGGACGTAGTCTGACGGCTGACCTGATTGACTGTGCAGCCGAACCGACACAGTTTAACG 13325 || |||||| || || || | || |||||||| || | |||| | ||| ||| Sbjct 3052 GTGGTCGTAGTAAAACAGCAGATTTAATCGACTGTGCTGCGAATACGACGC-TTTTTACG 2994 Query 13326 GACGATCGCTGGTA-CAGATTGCGCAGGCGCTTGCTGCGCCTTTCGGCATTGAGGTGGTG 13384 | | | || | || || ||| | || || || || ||||| |||| | Sbjct 2993 GGCAAAACCTTACATCAAATCGCGTCAGAACTGGCAAAACCGTTTAGCATTAAGGTCATT 2934 Query 13385 AAC--AACGGTGCGCCGTCGGGTGTTATTCCTGACGTCCAGCCCGATCACGGTGA-AACG 13441 | | || || | | | || | | | ||| ||||| |||| || ||| Sbjct 2933 AGCCAAAAGGCCCCAAAAACGCCGCTA--CAGGCTTTTCAGGCCGATTACGGCGACAACA 2876 Query 13442 GTGATTGAGGTAATCAACAAAATACTCGGTCAGCAGCAGGCACTGGCTTACGACGACCCA 13501 || || ||| | ||||| || || || ||||| || || | || ||| | Sbjct 2875 GTACACGAAGTATTAAACAAGGCGCTAGGAAGCCAACAGGCGCTCGCCTGGGATGACGAA 2816 Query 13502 CACGGCAGGCTGGTGATTGGTGGTATTGGCTCA--ACGCGGGCACATACTGCGCTGGTAC 13559 |||||| || | |||||| |||| | | || | ||| || |||||||| | Sbjct 2815 AACGGCAATTTGTTAATTGGTTTGGTTGG-TAATGACAAAGTCAC-CACCGCGCTGGT-C 2759 Query 13560 TCGGG-GAAAACATCCTTTCCTGCGATACGGAGAAGAGTATCCGGGAGCGTTTTTCTGTT 13618 | ||| ||||| || || ||| ||||| ||| |||||||||| || |||||||| | Sbjct 2758 TGGGGTGAAAATATTCTGAGCTGTGATACCGAGCAGAGTATCCGTGAACGTTTTTCGGAA 2699 Query 13619 TACCAGGTGGCGGGGCAGCGTGCCGGAAACGACGATGATTTCGGTGAGGCCACCACCACC 13678 || ||||| || || || || | || | || || || ||||| || || || ||| Sbjct 2698 TATCAGGTTGCAGGTCAACGCTCAGGTGATGATGACGACTTCGGGGAAGCAACATTAACC 2639 Query 13679 GCGCTGCGGGCCCG---CACAGAGGACGCATTTATTGCCCGTTACCGTCCGATGTATATC 13735 || | || ||| | || || || | || || || || || |||| Sbjct 2638 GCAATCCGAGCCAGAGCCAGGGATAGCGAA---ATCAGGCGCTATCGCCCTCAACATATA 2582 Query 13736 AGGCAGACAGGGCAGGCTACGGGGGCAGGCTGTATTGCGCGTGCTGACTTTGAAGCCCGA 13795 || | || | || || ||||| | ||| || || | | |||||||| | Sbjct 2581 CAACAATCCGGCAATGCCACAGGGGCCAGTTGTCGCGCACGGAGTAAATTTGAAGCGCAG 2522 Query 13796 CAACGGGCGGCGCGGACGGATGAAACCACCTATGTGGTGCAGGGCTGGCGACAGGGTAAC 13855 |||||||| || | || || |||||||| ||| |||||| || |||| || ||| || Sbjct 2521 CAACGGGCAGCCAGAACCGAAGAAACCACTTATACGGTGCAAGGTTGGCAGCAAGGTGAC 2462 Query 13856 GGTACGCTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCCGGT 13902 || | |||||| | || |||||||| || || |||||||| || || Sbjct 2461 GGCAGTCTGTGGAAACCTAACCAGCGAGTTATCGTCTTTGACCCCGT 2415 Score = 114 bits (126), Expect = 3e-21 Identities = 319/482 (66%), Gaps = 23/482 (5%) Strand=Plus/Minus Query 11648 ATTTTTTA--TGCACGGAGTTTATATGACG---TGGAAAGACAGGCTTCAGGACGCGTCA 11702 |||||||| | | |||| | | |||||| |||||| | | || || || || Sbjct 4663 ATTTTTTAGATTAAGGGAGGTGAGATGACGGTATGGAAAAATAAACTCCATCCGGCATCC 4604 Query 11703 TTTCGCGGTGTACCGTTTAAGGTCGAAGAAGAAAGTGCGGGAACA---GGTCGCCGTGTG 11759 |||||||| || |||||| |||| ||||| || | ||| || || || || || Sbjct 4603 TTTCGCGGCGTGCCGTTTCAGGTGGAAGACGAC---GAGGGGACTTTCGGACGGCGGGTA 4547 Query 11760 GAAACGCACGAATACCCGAACCGCGACAAACCCTATACCGAAGATCTGGGAAAAGTCACT 11819 || || |||||||| ||| | || || ||||||||||||||||||||| | ||| Sbjct 4546 CAAGTTCATGAATACCCCAACAGGGATAAGCCCTATACCGAAGATCTGGGACGCGCCACA 4487 Query 11820 TTCCGCCCGTCCATCACGGCTTATGTGGTGGGAGATGACTGCTTTGACCAGCGCGATCGC 11879 || | |||| || ||| || | || |||| | ||| || | | ||||| Sbjct 4486 CGACGATTTACTATCAACGCCTATCTGATCGGTAATGATTTCTTCGAGGACAGAGATCGT 4427 Query 11880 CTGATTGACGCGCTGAATAAACCCGGTCCCGGCACGCTTGTCCATCCGACATACGGTGAG 11939 || |||| || | ||| || || || || ||||| || ||||| |||||||| Sbjct 4426 CTCATTGTGGCTATTGATACGCCAGGGCCGGGAACGCTGGTACATCCCTACTACGGTGAA 4367 Query 11940 CTGAAAGTCTGTGTTGACGGGGAAGTTCGGGTCAG-CACATCGAA---AAGTGAAGGACG 11995 | |||||| ||||||| ||||| | || || || | || | | | |||| | Sbjct 4366 ATAGCTGTCTGTATTGACGGTGAAGTGAGAGTAAGCCATAGCGGACGCGATGGCAGGATG 4307 Query 11996 TAT--TGTCCGCTTTGACCTGAAGTTTGTCGAAGCAGGAGAGCTCTCTTACCCCACATCA 12053 | | ||| ||||| || | |||| || || || ||||| |||| ||| ||| || Sbjct 4306 TGTCGCGTCAGCTTTAAC--GTAGTT----GAGGCTGGCGAGCTTTCTTTCCCAACAGCA 4253 Query 12054 GGTGCGGCGACGGCGCAGACGCTGATGTCATCCTGTTCTGCACTGGATGACTGCATCAGT 12113 |||| ||||||| || ||||| || || ||| |||| || || | || |||| || Sbjct 4252 GGTGTTGCGACGGGACAAACGCTAATTTCTTCCAGTTCAGCCTTGAACGATCGCATTGGT 4193 Query 12114 GA 12115 || Sbjct 4192 GA 4191 Score = 104 bits (114), Expect = 6e-18 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 13785 TTGAAGCCCGACAACGGGCGGCGCGGACGGATGAAACCACCTATGTGGTGCAGGGCTGGC 13844 ||||||| | ||||||||| || | || || |||||||||||| || |||||||||| Sbjct 2400 TTGAAGCACAACAACGGGCCGCCAGAACCGAAGAAACCACCTATACCGTACAGGGCTGGC 2341 Query 13845 GACAGGGTAACGGTACGCTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCC 13899 | || ||| |||| | |||||| | || |||||||| |||||||||||||| || Sbjct 2340 GGCAAGGTGACGGCAGTCTGTGGAAACCTAACCAGCGCGTGATTGTCTTTGACCC 2286 Score = 87.8 bits (96), Expect = 4e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 14687 CCGTGCCGTGGTGATTTCCCTGTTCACCTGGCGGCGGGCTGAACCTGATGACAATGCCGA 14746 |||||||||| | || || || ||||||||||| || ||||| || ||||| | |||| Sbjct 1436 CCGTGCCGTGATTATCTCGCTATTCACCTGGCGACGTGCTGAGCCGGATGATGACACCGA 1377 Query 14747 CGTCCCGATGGGATGGTGGGGGGATACCTGGCCTGCGGTACAGAATGACCG 14797 ||| | ||||||||||| ||||||||||| | ||||| || ||||| Sbjct 1376 TACGCCGTTCGGATGGTGGGGTGATACCTGGCCGACCGTACAAAACGACCG 1326 >seq731 Length=3676 Score = 118 bits (130), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 6278 GGCAACAATGACGACTTCCTTTTTGCACGTTGATTTTCAGCAGCCCGCGGAGATGCGCTT 6337 |||| ||||| ||||| ||| ||| ||||||||||||||||| || | ||| || || Sbjct 1303 GGCAGCAATGGCGACTCCCTATTTACACGTTGATTTTCAGCAACCGGATGAGTTGGTTTT 1244 Query 6338 TAACCGCGCCCGTGTCCGGCGGGCGTTTGTCACGATTGGTCAGCGTCATATGCGTGATGC 6397 |||||||| | | || ||||||||||| ||||| || ||| |||||||| ||||| Sbjct 1243 CAACCGCGCGAGGTTGCGACGGGCGTTTGTGACGATCGGCCAGGTGCATATGCGCGATGC 1184 Query 6398 CCGTCGGCTGGTGATGCGCCATGCGCGG----TCGGCACCGGGTGAAAACCCCGGTTATC 6453 || || |||||||| | |||||| | ||| ||| || ||||| | || | Sbjct 1183 ACGACGCTTGGTGATG----AAGCGCGGTAAATTAGCAGGGGGAGATAACCCGGCATACC 1128 Query 6454 AGACCGGACGCCTGGCTCGTTCGATTGGTTA 6484 | ||||| ||||||| || |||||||| Sbjct 1127 ACACCGGGAAATTGGCTCGCTCCATTGGTTA 1097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118512876435432