Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq53 145 8e-30 seq308 118 1e-21 seq1 107 2e-18 seq240 89.7 5e-13 seq89 84.2 2e-11 >seq53 Length=1361919 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| ||||| | || || |||||||| || || ||||| Sbjct 1232571 GCCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGA 1232512 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| | ||||| || ||||| |||||| |||||| ||| |||||||||||||| Sbjct 1232511 CAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGG 1232452 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| ||| ||||| | ||| | ||| || | || ||||| Sbjct 1232451 AATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCAC 1232392 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || ||||| ||||| || |||||||| |||||||| Sbjct 1232391 TTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCAT 1232344 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || |||||||| || || || | |||||| || ||||| || || ||||| | Sbjct 1239759 CCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1239700 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| | |||||| |||||||||||||| | || | |||||| ||||| || || Sbjct 1239699 AATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGG 1239640 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | || | |||| | | || | || |||| ||||| || Sbjct 1239639 ATTCCTTCCTTATC-TTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAAC 1239581 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| || || || || ||||| || || ||||| || ||||| Sbjct 1239580 CTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || ||||| || || || || | |||||| || ||||| || || ||||| | Sbjct 1232798 CCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1232739 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| | |||||| | |||||||||||| |||| | ||| || ||||| || || Sbjct 1232738 AATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGG 1232679 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | || | ||| | | || | || |||| ||||| || Sbjct 1232678 ATTCCTTCCTTATC-TTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAAC 1232620 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | || ||||| ||||| || || || || |||||||| Sbjct 1232619 CTCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || |||||||| ||||| || | || || ||||| || ||||| ||||| Sbjct 1239988 GCCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGA 1239929 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| | ||||||||||| |||||| ||| ||||| || || || Sbjct 1239928 GAGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 1239869 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || ||| | | ||| || ||||||| ||||| || Sbjct 1239868 AATACCTTCCTTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTAC 1239809 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | || ||||| ||||| ||||| || || ||||||||| Sbjct 1239808 CTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCATA 1239760 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | || || ||||| || || || || || Sbjct 1240443 CCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAG 1240384 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| |||||||| |||||| |||||| ||| ||||| || ||||| Sbjct 1240383 AGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 1240324 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||||| ||| | | ||| | || || | || || || Sbjct 1240323 ATACCTTCTTTATCT-TGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTAC 1240265 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || ||||| ||||| ||||| || ||||||||||| Sbjct 1240264 CTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 || || || || || | |||||||| |||||||||||||||||| | || | Sbjct 1234450 CGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCA 1234391 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||||||||| |||||| ||| ||||| || || || || ||||| || Sbjct 1234390 TCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTA 1234331 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | ||| | || |||| ||||| || || | || | Sbjct 1234330 TCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATG 1234271 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || |||||||| ||||| ||||| ||||||||| Sbjct 1234270 GTTTTACCGGTCAAAGTTTTGACGAAGATTTGCATA 1234235 >seq308 Length=190705 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| |||||||| || | || | ||| || ||||||||||| |||||||| Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGAT 86681 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| | ||||| ||||| |||||| ||||| || ||||| || Sbjct 86682 AATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGA 86741 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| | || | ||| | | ||| | || || | |||||| || Sbjct 86742 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGAC 86800 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | |||||||| || | |||||||| || || |||||| Sbjct 86801 CTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATA 86849 >seq1 Length=10097680 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| ||||| | || || || | || || ||||| || || || ||||| | Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| | ||||| ||||| |||||| |||||||||||| ||||| Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| ||| |||| | || | | ||| | ||||||| ||||| || Sbjct 7547495 ATGCCCTCTTTGTC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 7547437 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || ||||| || | ||||| ||||| |||||||| Sbjct 7547436 TTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 7547389 >seq240 Length=301270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 427/672 (64%), Gaps = 9/672 (1%) Strand=Plus/Minus Query 153129 GGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 153188 || ||||| |||| |||||| || ||||| || | | || | ||||| ||| Sbjct 294215 GGCTCAAAAGACTGGTTGTTTCCCAGAATTTGAGCAGCAGATGCTGCAGGCATTGCAGCC 294156 Query 153189 ACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAGTC 153247 || | ||| || ||||| | || || ||| ||||| |||| || | | |||||| Sbjct 294155 ACCAACAAAGAGTTACGCACACCATGAATTTTTATGTGT-TCTTTAAGAGCCGCCCAGTC 294097 Query 153248 CCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTT 153307 ||| | |||||| || ||||||| || ||||| | || |||| |||| || Sbjct 294096 CCAAAGATCAGTAGGCGTCTTGTTCCACATGTCATATTGAAGAATGCCTTTGCTAACTGG 294037 Query 153308 GCTACCGGCAAACGTGCTATACGGCTCAC--TGTCAGACGCCAGTTTCAAACTGGCATCG 153365 |||||| || | || ||||| || ||| | |||| | | || || || Sbjct 294036 GCTACCTTCATATGTTTCGTACGGGCCATATTGTTTG--GCCAACTCACAGCTAGCCTCT 293979 Query 153366 AGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTC 153425 | ||| | | ||| | ||||||| |||| |||| || | || ||| ||| |||||| Sbjct 293978 AACGCACCGTAATATATAGTTTCGAAAATTTGTTGATTTAATAGAACAGCATTTTCGCTC 293919 Query 153426 ACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATG 153485 |||| || |||| | | || || || || || ||||| | || || | || Sbjct 293918 TCGTATGGATAACGCATTAAAATTAACGCGTCAGCAAATCCTTGGACACCTATAGCAATC 293859 Query 153486 GGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATA 153545 ||||| || ||||||||||||||||| | | | |||||| | || ||| || Sbjct 293858 GGACGGTGACGCATATTAGATTTTTTGGTTTCCGGCAGCGGATAGTAGTTAATGTCAATT 293799 Query 153546 ATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATC-AAA 153604 ||||| || | | | | | | || || | ||| | |||||| | Sbjct 293798 ATTTTGTTGAGGTTCTTTGTTATAAGCTTTGTAACTTCTTTCAATTTGTAAAAATCGTAT 293739 Query 153605 CGTT--CCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTT 153662 ||| | || | | | |||| | ||||| || |||| ||||||||| ||| || Sbjct 293738 TGTTTCTCCGTAGTCACGAACATGTTTAGCGCAATTGAGGCCAGGTTGCAAACTGCAATT 293679 Query 153663 TCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCG 153722 || || | ||||| || ||||| | || || || || |||||||| || Sbjct 293678 TCATCAACTGATGTATATTCGACAATTTCTGTACTAAAGTTACTACATTTTATTGTACCA 293619 Query 153723 CAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCG 153782 || | ||||||||||||||| || ||||| || ||||| ||||| || || | || Sbjct 293618 ATGTTCCCTTGATTGCTTTTGCGATTGCAAGCATCTTTGTAAAGCATATAAGGAGCTCCA 293559 Query 153783 GTTTCGGCTTGA 153794 || || ||||| Sbjct 293558 GTCTCTTCTTGA 293547 >seq89 Length=807233 Score = 84.2 bits (92), Expect = 2e-11 Identities = 253/386 (66%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 153129 GGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 153188 || ||||| |||| |||||| || ||||| || | | || | ||||| ||| Sbjct 806595 GGCTCAAAAGACTGGTTGTTTCCCAGAATTTGAGCAGCAGATGCTGCAGGCATTGCAGCC 806654 Query 153189 ACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAGTC 153247 || | ||| || ||||| | || || ||| ||||| |||| || | | |||||| Sbjct 806655 ACCAACAAAGAGTTACGCACACCATGAATTTTTATGTGT-TCTTTAAGAGCCGCCCAGTC 806713 Query 153248 CCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTT 153307 ||| | |||||| || ||||||| || ||||| | || |||| |||| || Sbjct 806714 CCAAAGATCAGTAGGCGTCTTGTTCCACATGTCATATTGAAGAATGCCTTTGCTAACTGG 806773 Query 153308 GCTACCGGCAAACGTGCTATACGGCTCAC--TGTCAGACGCCAGTTTCAAACTGGCATCG 153365 |||||| || | || ||||| || ||| | |||| | | || || || Sbjct 806774 GCTACCTTCATATGTTTCGTACGGGCCATATTGTTTG--GCCAACTCACAGCTAGCCTCT 806831 Query 153366 AGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTC 153425 | ||| | | ||| | ||||||| |||| |||| || | || ||| ||| |||||| Sbjct 806832 AACGCACCGTAATATATAGTTTCGAAAATTTGTTGATTTAATAGAACAGCATTTTCGCTC 806891 Query 153426 ACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATG 153485 |||| || |||| | | || || || || || ||||| | || || | || Sbjct 806892 TCGTATGGATAACGCATTAAAATTAACGCGTCAGCAAATCCTTGGACACCTATAGCAATC 806951 Query 153486 GGACGATGGCGCATATTAGAtttttt 153511 ||||| || ||||||||||||||||| Sbjct 806952 GGACGGTGACGCATATTAGATTTTTT 806977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496053762479200