Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq184 248 8e-61 seq150 82.4 7e-11 seq138 82.4 7e-11 >seq184 Length=525875 Score = 248 bits (274), Expect = 8e-61 Identities = 429/616 (70%), Gaps = 8/616 (1%) Strand=Plus/Minus Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13750 ||||||||| || | ||| || | | | || || |||||| |||| ||| |||||| Sbjct 28981 TTCTAATAGCAAACGATCCGCTACATATTCTATGTATTGACACATACTTTCATTATTCAT 28922 Query 13751 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13810 ||| |||| || || || | | || | |||||| ||||| || || || || Sbjct 28921 ACCGATTAAATTGACTGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGGCATC 28862 Query 13811 TTTTATAATAATTGTAATAATC--TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT 13868 |||| || || |||| | || || | || | | | | || |||||| ||| Sbjct 28861 GGTTATTAT--TTCCAATATGCGTTCTTTGGTCGGTTTTTGTATCAAATATTTAAACATT 28804 Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTC-TACTAATAAGTTCGTTTGAAAATGT 13927 ||| |||||| || ||||| | || ||||| | | || ||| ||| || |||||||| Sbjct 28803 AAAACCGCAAATTCGCAATGTAAACCTTCATCGCGTGATATTAA-TTCATTAGAAAATGT 28745 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 || || ||||| | ||| ||||| || | ||||||||| | |||||| || ||| Sbjct 28744 TAGACCCGGCATTATTCCACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCACTAAA 28685 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 |||||| || || || |||||||| ||||| | || || ||||| || Sbjct 28684 GAATATACCTTCGACGGCAGCAAAAGCTATGACACGCTCACCAAAATTCGCCGAACGCGA 28625 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 |||||||| | ||||||||| | ||| ||||||| || ||| || ||||| || Sbjct 28624 TGATATCCAAGCTAAAGCCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTCAATGGC 28565 Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 |||||| | ||| || ||||| | | || || |||| ||||||||||| ||||| Sbjct 28564 ATTAAAAAGATAATCGCGTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAAACTATA 28505 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 |||||| ||||||| ||||| || ||||| ||||||||||||||||| | |||||| | Sbjct 28504 CATTTCCGAGTGTACATTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGCTTCGGT 28445 Query 14228 CCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 ||| ||||| ||| |||| | ||| | ||||| |||||||| || || ||| | Sbjct 28444 TACTTGAACTTCTTGAG-AAAAACGTTCCACTAAATTCTCATTAACAATGCCGTCAGATG 28386 Query 14287 CTGCAAAAAATGCCAA 14302 | |||||||| ||||| Sbjct 28385 CCGCAAAAAAAGCCAA 28370 >seq150 Length=562241 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 121072 TTATGTACCTGGAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAGATGATGGATC 121131 |||| |||||| |||||||| ||| | ||| ||||||| ||||||||| || | ||| Sbjct 103053 TTATCAACCTGGTAAAAGAGGCTGGATCAAGGTGAAGAAAGATTACTTATATCAAGGAAA 102994 Query 121132 CATGGCAGATTCTGCAGACTTAGTAGTTTTAGG 121164 ||||| ||| |||| || ||||||||||| || Sbjct 102993 AATGGCTGATACTGCTGATTTAGTAGTTTTGGG 102961 >seq138 Length=713973 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/146 (73%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 131659 GATCCAAAAAAGATGCATAATGGAACAATAGAATACACAAGTATAGATATGCATAACGGT 131718 ||||| ||||| ||||||||||| |||||| |||| || | ||| ||| | ||| Sbjct 371653 GATCCGAAAAAAATGCATAATGGGACAATACAATATACCTCAAGAGACGCCCATCAGGGT 371712 Query 131719 GTATCCCCGTCTAGGCGAGGAGATTTAGAAATTTTAGGATATTGTATAATAAAATGGTTA 131778 || ||| | || |||||||||| |||||| | || ||| |||||| ||||||| Sbjct 371713 GT---TCCGACCAGAAGAGGAGATTTTGAAATTATGGGTTATAATATAATTGAATGGTTG 371769 Query 131779 GGCGGTAAATTGCCATGGGAAAATGA 131804 || | |||| ||||||| ||| || Sbjct 371770 GGAGTGGAATTACCATGGGTAAAAGA 371795 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/146 (73%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 131659 GATCCAAAAAAGATGCATAATGGAACAATAGAATACACAAGTATAGATATGCATAACGGT 131718 ||||| ||||| ||||||||||| |||||| |||| || | ||| ||| | ||| Sbjct 376344 GATCCGAAAAAAATGCATAATGGGACAATACAATATACCTCAAGAGACGCCCATCAGGGT 376403 Query 131719 GTATCCCCGTCTAGGCGAGGAGATTTAGAAATTTTAGGATATTGTATAATAAAATGGTTA 131778 || ||| | || |||||||||| |||||| | || ||| |||||| ||||||| Sbjct 376404 GT---TCCGACCAGAAGAGGAGATTTTGAAATTATGGGTTATAATATAATTGAATGGTTG 376460 Query 131779 GGCGGTAAATTGCCATGGGAAAATGA 131804 || | |||| ||||||| ||| || Sbjct 376461 GGAGTGGAATTACCATGGGTAAAAGA 376486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479718099613400