Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq184 224 9e-54 seq138 84.2 2e-11 seq150 82.4 7e-11 >seq184 Length=525875 Score = 224 bits (248), Expect = 9e-54 Identities = 425/617 (69%), Gaps = 10/617 (2%) Strand=Plus/Minus Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538 |||||||| || | ||| || | | | || || |||||| |||| ||| |||||| Sbjct 28981 TTCTAATAGCAAACGATCCGCTACATATTCTATGTATTGACACATACTTTCATTATTCAT 28922 Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13598 ||| |||| || || || | | || | |||||| ||||| || || || || Sbjct 28921 ACCGATTAAATTGACTGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGGCATC 28862 Query 13599 GTTTATAATAATCTTAATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13655 | |||| || | |||| || || || | || | | | | || |||||| || Sbjct 28861 GGTTATTATTTCC--AATA-TGCGTTCTTTGGTCGGTTTTTGTATCAAATATTTAAACAT 28805 Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTC-TACTAATAAGTTCGTTTGAAAATG 13714 |||| |||||| || ||||| | || ||||| | | || ||| ||| || ||||||| Sbjct 28804 TAAAACCGCAAATTCGCAATGTAAACCTTCATCGCGTGATATTAA-TTCATTAGAAAATG 28746 Query 13715 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 13774 ||| || ||||| | ||| ||||| || | ||||||||| | ||| || ||| || Sbjct 28745 TTAGACCCGGCATTATTCCACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCACTAA 28686 Query 13775 AGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT 13834 ||||||| || || || |||||||| ||||| | || || ||||| || Sbjct 28685 AGAATATACCTTCGACGGCAGCAAAAGCTATGACACGCTCACCAAAATTCGCCGAACGCG 28626 Query 13835 TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 ||||||||| | ||||||||| | ||| ||||||| || ||| || || || | Sbjct 28625 ATGATATCCAAGCTAAAGCCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTCAATGG 28566 Query 13895 CATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 |||| || | || || ||||| | | || || |||| ||||||||||| |||| Sbjct 28565 CATTAAAAAGATAATCGCGTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAAACTAT 28506 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 ||||||| ||||||| ||||| || ||||| |||||||||||||| || | |||||| | Sbjct 28505 ACATTTCCGAGTGTACATTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGCTTCGG 28446 Query 14015 ACCATTGTACCTCC-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTA 14073 ||| || || ||| |||| | ||| | || || ||||||||||| || ||| Sbjct 28445 TTACTTGAACTTCTTGAGAAAAA-CGTTCCACTAAATTCTCATTAACAATGCCGTCAGAT 28387 Query 14074 GCTGCAAAAAATGCCAA 14090 || |||||||| ||||| Sbjct 28386 GCCGCAAAAAAAGCCAA 28370 >seq138 Length=713973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/152 (72%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 131353 AGAGTATAAACGAGATCCCAAAAAGATGCATAATGGAACAATAGAGTACACAAGTATAGA 131412 ||| | ||||| ||||| ||||| ||||||||||| |||||| | || || | ||| Sbjct 371640 AGACTTTAAACCCGATCCGAAAAAAATGCATAATGGGACAATACAATATACCTCAAGAGA 371699 Query 131413 TATGCATAAAGGTGTATCTCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTAT 131472 ||| | ||||| |||| | || |||||||||| |||||| | || ||| ||| Sbjct 371700 CGCCCATCAGGGTGT---TCCGACCAGAAGAGGAGATTTTGAAATTATGGGTTATAATAT 371756 Query 131473 AATAAAATGGTTAGGTGGTAAATTGCCATGGG 131504 ||| ||||||| || | |||| ||||||| Sbjct 371757 AATTGAATGGTTGGGAGTGGAATTACCATGGG 371788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/152 (72%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 131353 AGAGTATAAACGAGATCCCAAAAAGATGCATAATGGAACAATAGAGTACACAAGTATAGA 131412 ||| | ||||| ||||| ||||| ||||||||||| |||||| | || || | ||| Sbjct 376331 AGACTTTAAACCCGATCCGAAAAAAATGCATAATGGGACAATACAATATACCTCAAGAGA 376390 Query 131413 TATGCATAAAGGTGTATCTCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTAT 131472 ||| | ||||| |||| | || |||||||||| |||||| | || ||| ||| Sbjct 376391 CGCCCATCAGGGTGT---TCCGACCAGAAGAGGAGATTTTGAAATTATGGGTTATAATAT 376447 Query 131473 AATAAAATGGTTAGGTGGTAAATTGCCATGGG 131504 ||| ||||||| || | |||| ||||||| Sbjct 376448 AATTGAATGGTTGGGAGTGGAATTACCATGGG 376479 >seq150 Length=562241 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 120786 TTATGTACCTGGAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAAATGATGGATC 120845 |||| |||||| |||||||| ||| | ||| ||||||| ||||||||| || | ||| Sbjct 103053 TTATCAACCTGGTAAAAGAGGCTGGATCAAGGTGAAGAAAGATTACTTATATCAAGGAAA 102994 Query 120846 CATGGCAGATTCTGCAGACTTAGTAGTTTTAGG 120878 ||||| ||| |||| || ||||||||||| || Sbjct 102993 AATGGCTGATACTGCTGATTTAGTAGTTTTGGG 102961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478578923123640