Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq184 118 2e-21 seq148 95.1 2e-14 >seq184 Length=525875 Score = 118 bits (130), Expect = 2e-21 Identities = 476/734 (65%), Gaps = 48/734 (7%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| | || || |||||||||| |||||||| ||||| | || || | ||| Sbjct 28266 AGGCTGAAGCTTCTTTTTGGACGGCGGAAGAGGTTGATCTCGCTGCAGATCTTGATCATT 28325 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||||| || || ||||| ||| || | ||||| || || ||||||| || |||| Sbjct 28326 GGGAG---CGATTAACTGATGATGAACGTCATTTTATTTCACATGTTTTGGCTTTTTTTG 28382 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACC 125216 | | || || || || || || || ||| | || ||| || |||||||| ||| | Sbjct 28383 CGGCATCTGACGGCATTGTTAATGAGAATTTAGTGGAACGTTTTTCTCAAGAAGTTCAAG 28442 Query 125217 ATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGA 125275 || || | ||| ||||||| || || ||||| || || || || |||||||| Sbjct 28443 TAACCGAAGCT--CGTTGCTTTTATGGTTTTCAAATAGCCATCGAAAATGTACACTCGGA 28500 Query 125276 AATGTACTCTACACTGATTG--ACATGTACATTCGC-GATCCGCAACGTAAACAC-AT-- 125329 |||||| | ||| |||| |||| || |||| |||||| || ||| | || Sbjct 28501 AATGTATAGTTTACTTATTGAAACATTTA---TCGCAGATCCGAAA---GAACGCGATTA 28554 Query 125330 GCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG---GCTCAATGGG---- 125382 || ||||| || || || ||| |||||| || ||||||| || |||||| Sbjct 28555 TCTTTTTAATGCCATTGAGACGATGCCGT---TAGTTAAAAAGAAAGCGGAATGGGCTTT 28611 Query 125383 TGATTCGGT-GGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCC 125441 | || | | |||| || | | | || || || | | | || || || Sbjct 28612 AGCTTGGATATCATCGCGTTCGGCGAATTTTGGT-----GAGCGTGTCATAGCTTTTGCT 28666 Query 125442 GCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGC 125501 ||||| || || || |||||| || |||||||| | || |||||||| ||||| || Sbjct 28667 GCCGTCGAAGGTATATTCTTTAGTGGAAGTTTTGCTTCGATATTTTGGCTTAAGAAACGT 28726 Query 125502 GGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACAC 125561 ||| | ||||| || || || ||| || || ||||| || || || || |||| Sbjct 28727 GGAATAATGCCGGGTCTAACATTTTCTAATGAATTAATATCACGCGATGAAGGTTTACAT 28786 Query 125562 TGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGAT 125621 || || ||||| || || ||||| || ||| || | | | | | | | Sbjct 28787 TGCGAATTTGCGGTTTTAATGTTT---AAATATTTGATAC------AAAAACCGACCAAA 28837 Query 125622 GAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAA 125681 ||| | | | || ||||||||||||| | || ||| | || ||||| || ||| Sbjct 28838 GAACGCATATTGGAAATAATAACCGATGCCGTTAAAATTGAAAAGGAATTTCTGACAGAA 28897 Query 125682 TCCCTACCGGTCAGCATGATTGGCATGA--ACTGCAAGCTAATGTGCGAGTACATAGAGT 125739 | ||||| |||| | || || |||| | || ||| ||||| | |||||||| | Sbjct 28898 GCTCTACCAGTCAATTTAATCGGTATGAATAATGAAAG--TATGTGTCAATACATAGAAT 28955 Query 125740 TTGTGGCAGATCGT 125753 ||| || |||||| Sbjct 28956 ATGTAGCGGATCGT 28969 >seq148 Length=545759 Score = 95.1 bits (104), Expect = 2e-14 Identities = 312/478 (65%), Gaps = 14/478 (3%) Strand=Plus/Plus Query 96888 AAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTT 96947 ||||| ||||| ||| | || | |||||||| ||||||||||| || ||||| || ||| Sbjct 220279 AAACGTCCAGGTGCTTTTGCTATGTACTTGGAGCCTTGGCACGCAGATGTTTTCGAATTT 220338 Query 96948 ATCGAGATGCGCAAAAACTCTGGCTTTGAAGAG---GCACGAGCCAGGGACTTGTTTTAT 97004 | || || || || | ||| ||| ||| | ||||| | || ||||||||| Sbjct 220339 CTAGATTTGAAAAAGAATTTTGG---TGAGGAGAAAGATCGAGCACGCGATTTGTTTTAT 220395 Query 97005 GCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTA 97064 || || ||| | || ||| |||||||||| | || | || | |||| | ||| ||| Sbjct 220396 GCCCTATGGATACCGGATCTGTTCATGAAAAGAGTAGAGGATGATGGCGATTGGTCTCTA 220455 Query 97065 ATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAA- 97123 ||||| || | | || ||| ||| || ||||| || || ||||| | || Sbjct 220456 ATGTGTCCTCATAAATGTCCTGGTTTGTGTGAAGTTTGGGGAGATGAATTTGA--CAAAT 220513 Query 97124 -GTACACGGCCTACGAGCAAGAGGGCCGATACG--TGAGACGAGTCGATGCACGAGAACT 97180 |||| | ||||| ||||| | | || | | || | | | || || | | Sbjct 220514 TATACATGAAATACGAAAGTGAGGG-CAAAGCGAATCAAAC-AATTAAAGCTCGTGCCTT 220571 Query 97181 GTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGA 97240 |||| || || | | |||| | |||||||||||||| || || || ||||| || Sbjct 220572 GTGGTTTGCAATATGCAAGTCTCAAGCGGAGACTGGAACTCCTTATATGCTTTACAAAGA 220631 Query 97241 TACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTG 97300 | | |||||||| || || |||| || | || || || || || |||| Sbjct 220632 TGCTTGCAATCGCAAGAGTAATCAACAGAACATTGGTACTATAAAATCTAGTAACTTGTG 220691 Query 97301 CACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCG 97358 || |||||||| || ||| | || | || || | ||||||||| ||||| ||| Sbjct 220692 TACAGAAATTGTCGAATACACTTCGGCTGATGAAATTGCAGTTTGCAACCTGGCCTCG 220749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043906390760