Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq595 165 2e-36 seq813 120 8e-23 seq731 100 7e-17 >seq595 Length=6865 Score = 165 bits (182), Expect = 2e-36 Identities = 350/514 (68%), Gaps = 19/514 (4%) Strand=Plus/Minus Query 13062 ACGGATCTCAATCGCGATATTTCGGCACGAATGGCACAGGTTGAACGTACTGC-ATGCGA 13120 || ||| ||| || |||||| | ||||| ||||||| |||||| || | | || Sbjct 3523 ACCGATGCCAACCGGGATATTGCAACACGACTGGCACAAGTTGAAAAAACGGTTACCCGT 3464 Query 13121 ACGCC-GATGATGTTCGGCCCGCACTGGTATCTGGC-GCAGCCTGGTATGACGACGCCGG 13178 ||||| || | || | ||||||||||| |||||| || ||||||||| | || | Sbjct 3463 ACGCCAGAGGCGGTGCTACCCGCACTGGT-TCTGGCCGCCAAGTGGTATGACAATGCGGC 3405 Query 13179 GCGGGAATCTGACATCCTCACTCGAAATCCCGTCCC-CATCCAGGATTTATCCCGGTTGA 13237 |||||| | || ||| || || ||| |||| ||||| || ||||| || ||| | Sbjct 3404 ACGGGAAACCGATATCACCAGCCGGAATGCCGTTAATCATCCTGGCTTTATGCCAGTTAA 3345 Query 13238 GCCGCGGAGGGTCCCGGTACGATGAATAATACGGtttttttACGCGTCAACGGGCGTGAC 13297 || ||| || || | | ||||| |||| || | || |||||||||||||| || Sbjct 3344 ACCTTTGAGAGTACCCGCAAGATGAGTAATCACGTGATATTGCGCGTCAACGGGCGCGAA 3285 Query 13298 TGGGGAGGATGGACGTCAGTACGGATAAGTGCGGGCATTGACCGTATTGCCCGGGACTTT 13357 ||||| || ||||| |||| ||| || ||||| || || | | || || || Sbjct 3284 TGGGGGGGCTGGACACGGGTACAGATTTCAGCAGGCATAGAGCGACTCTCACGCGATTTC 3225 Query 13358 AATGTCTCGATCACCCGGCAGTGGCCTGGTGGA----GAAGACGTACCG-------CCAG 13406 ||||| |||||||| || |||| ||||| | ||||| |||||| |||| Sbjct 3224 AATGTAGAAATCACCCGCCAATGGCTTGGTGAATCAGGAAGA-GTACCGTTACAGCCCAG 3166 Query 13407 --TAAAAAATGGTGACTCTGTTGAGGTACTCATTGGCGATGATTTAGTTATTACCGGCTG 13464 | ||||| ||||| ||| || || ||||| || | ||| ||| | |||||||| Sbjct 3165 AATTAAAAAAGGTGAACTTGTCGAAGTCCTCATCGGTCAGGATAAAGTCCTAACCGGCTG 3106 Query 13465 GGTTGAGGCGTTACCGCTACGTTATGATGCGCAGACCATTATGACGGGCATTGTCGGGCG 13524 | |||| || |||| ||||||||||||| | | || | || || || || Sbjct 3105 GATTGAAGCCACACCGATACGTTATGATGCTAAAAGTATCCAGGTTGGTATCAGTGGTCG 3046 Query 13525 CAGCAAAACGGCAGATCTTATCGACTGTTCTGCG 13558 || ||||| |||||| | ||||||||| ||||| Sbjct 3045 TAGTAAAACAGCAGATTTAATCGACTGTGCTGCG 3012 Score = 150 bits (166), Expect = 5e-32 Identities = 246/353 (70%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 11967 GCATCATTTCGTGGAGTGCCTTTCTCCGTTGAAGATGATGAAAGCACCTTTGGACGCCGC 12026 ||||| ||||| || ||||| || || ||||| || || | || || ||||| || Sbjct 4609 GCATCCTTTCGCGGCGTGCCGTTTCAGGTGGAAGACGACGAGGGGACTTTCGGACGGCGG 4550 Query 12027 GTACAGGTACATGAATATCCGAACAGGGATAAGCCCTGGACGGAGGATTTAGGTCGCGCC 12086 ||||| || |||||||| || |||||||||||||||| || || ||| | || |||||| Sbjct 4549 GTACAAGTTCATGAATACCCCAACAGGGATAAGCCCTATACCGAAGATCTGGGACGCGCC 4490 Query 12087 ACGCGCCGCCTGACGATAAATGCTTATCTTGTCGGTGATGAT---TACGCAGACAGGCGG 12143 || || || | || || || || ||||| ||||| ||||| | || |||| | Sbjct 4489 ACACGACGATTTACTATCAACGCCTATCTGATCGGTAATGATTTCTTCGAGGACA---GA 4433 Query 12144 GATCGTCTTATTGGTGCCATTGAAACCGCAGGCCCTGGTACGCTGGTCCATCCGCAGTAT 12203 |||||||| |||| || ||||| || |||| || || |||||||| ||||| | || Sbjct 4432 GATCGTCTCATTGTGGCTATTGATACGCCAGGGCCGGGAACGCTGGTACATCCCTACTAC 4373 Query 12204 GGCGAAATGCAGGGCAGCATTGACGGACAGGTCAGGATCACTCACAGCAGTACAGAAGGG 12263 || ||||| | | | |||||||| | || || | | || ||| | || || Sbjct 4372 GGTGAAATAGCTGTCTGTATTGACGGTGAAGTGAGAGTAAGCCATAGCGGACGCGATGGC 4313 Query 12264 CGCATGTGTCGTGTCTCCTTTCAGTTTGTGGAAAGTGGGGAACTTTCTTTTCC 12316 | |||||||| ||| |||| | | || || ||| || |||||||| || Sbjct 4312 AGGATGTGTCGCGTCAGCTTTAACGTAGTTGAGGCTGGCGAGCTTTCTTTCCC 4260 Score = 104 bits (114), Expect = 6e-18 Identities = 396/609 (65%), Gaps = 21/609 (3%) Strand=Plus/Minus Query 14915 CGGGCAGTGGTGATTTCTCTTTTTACCTGGCGCCGGGCGGAGCGGGATGACAGGACCCC- 14973 || || ||| | || || || || |||||||| || || |||| |||||| ||| || Sbjct 1435 CGTGCCGTGATTATCTCGCTATTCACCTGGCGACGTGCTGAGCCGGATGAT--GACACCG 1378 Query 14974 ACA-GCCATACGGCTGGTGGGGGGACACCTGGCCTGCTGTTCAGAATGACCGCATCGGTT 15032 | | ||| | ||| |||||||| || |||||||| | || || || ||||| || |||| Sbjct 1377 ATACGCCGTTCGGATGGTGGGGTGATACCTGGCCGACCGTACAAAACGACCGGATTGGTT 1318 Query 15033 CCCGCCTCTACCTGCTGAAACGCCGCAAACTCACCAATAAAACGCCGCAGGATGCCCGCG 15092 | || | || || | |||||| ||| | || || | || |||| | || | Sbjct 1317 CTCGATTGCACTTGTTAAAACGCAGCACTTTAACTAACCAGACAGCGCAAAAGGCGAAAG 1258 Query 15093 AATACATGCAGCAGGCGCTGGCGTGGATGACAGACGATGGCGTGGCGGCACGTATTGATG 15152 |||| || |||||||| | ||||||||||||||||| | || | ||||| Sbjct 1257 AATATATCTCTCAGGCGCTCACATGGATGACAGACGATGGTATCACGCTTCAGGTTGATA 1198 Query 15153 T-GACATCTGAACGCACAGGAACAGATACCCTG---GCAGCTGGCGT---GACGATATAT 15205 | || | | |||| ||| | |||| | ||| ||| | | |||| || | Sbjct 1197 TTGAGGTA-GTACGCTCAGACATCGATAGATTAATTGCAACTGTCATCCTGACGTTACCT 1139 Query 15206 CAGCGGGACGGGGTAATTCACAATATTACATTCGATGATATATGGAGCAAACTTAATGGC 15265 | | || ||| | | || || || | || | |||||| | | ||| | Sbjct 1138 GACCATAACA---TAA---AAACGATGACCATCAACAATTTGTGGAGCGTAATCCATG-C 1086 Query 15266 TGAC-AGTCAATTTGCACGTCCTGAACTTCCTCAGTTGATTGCTACCATTCGCAGCGATT 15324 || || ||| | || || || || || |||| | ||||||||| | |||| Sbjct 1085 AAACTAGCGGTTTTTCGCGCCCGACCCTGCCACAACTGATAGACACCATTCGCGGTGATT 1026 Query 15325 TACTGACCCGTTTTCAGCAGGATGTTGTGTTACGTCGCATGGATGCCGAGGTTTACAGCC 15384 | || || || ||| | | ||| || ||||| ||| | |||||||| || ||| Sbjct 1025 TGCTCACACGATTTAATGAAGATAGCGTATTACGCCGCCTCGATGCCGAAGTGTACGCAA 966 Query 15385 GGGTACAGGCTGCTGCCGTACATACGCTGTATGGTTATATCGATTATCTGGCCCGGAATA 15444 | |||||||| || || | ||||| || || || |||||||||||| | || || |||| Sbjct 965 GAGTACAGGCCGCCGCTATTCATACCCTATACGGCTATATCGATTATTTAGCGCGTAATA 906 Query 15445 TGCTGCCTGATATGTGTGATGAGGACTGGCTTTACCGTCACGCGAGGATTAAGCGTTGTC 15504 | |||| ||| | ||||| || ||| | ||| |||| | || ||||||||| Sbjct 905 TCTTGCCGGATTTAGCCGATGAAGATTGGTTGACCCGACACGGTAATATCAAGCGTTGT- 847 Query 15505 CCAGGAAAA 15513 ||| ||||| Sbjct 846 CCACGAAAA 838 Score = 102 bits (112), Expect = 2e-17 Identities = 226/337 (67%), Gaps = 4/337 (1%) Strand=Plus/Minus Query 13797 CCACGGCACTGGTACTTGGCGAAAATATTCTTTCCTGTGATACCGAGCGTAGTGTTCGTG 13856 |||| || ||||| || ||||||||||| |||||||||||||| ||| | |||| Sbjct 2772 CCACCGCGCTGGTCTGGGGTGAAAATATTCTGAGCTGTGATACCGAGCAGAGTATCCGTG 2713 Query 13857 AGCGTTTCTCCAGTTATCTGGTTACGGGGCAGCGTCCTGGTACGGATGACGATTTCGGCG 13916 | ||||| || |||| |||| | || || || | ||| |||||||| ||||| | Sbjct 2712 AACGTTTTTCGGAATATCAGGTTGCAGGTCAACGCTCAGGTGATGATGACGACTTCGGGG 2653 Query 13917 AGGCAACCATTGCTGCTATCC--GGCAGAGTACTGGTGATGCAGGCGTCACGCGGTATCG 13974 | ||||| | | || |||| | ||||| | | ||| | ||| ||| ||||| Sbjct 2652 AAGCAACATTAACCGCAATCCGAGCCAGAG--CCAGGGATAGCGAAATCAGGCGCTATCG 2595 Query 13975 TCCCCACACCATTCAGCAGTCAGGAACTGCCACAACTGACAGCTGCAAATCACGCTGTGA 14034 || || || || || || || | ||||||| | ||| || |||| || | Sbjct 2594 CCCTCAACATATACAACAATCCGGCAATGCCACAGGGGCCAGTTGTCGCGCACGGAGTAA 2535 Query 14035 ATTTGAAGCCCGTCAGCGTGCGGCGAAAACGCTGGAAACCACCTATACCGTACAGGGATG 14094 ||||||||| | || || || || | ||| |||||||| ||||| || || || || Sbjct 2534 ATTTGAAGCGCAGCAACGGGCAGCCAGAACCGAAGAAACCACTTATACGGTGCAAGGTTG 2475 Query 14095 GAGACAGGGGAATGGCGAATTGTGGAAACCGAATCAG 14131 | || || | ||| |||||||||| || ||| Sbjct 2474 GCAGCAAGGTGACGGCAGTCTGTGGAAACCTAACCAG 2438 Score = 102 bits (112), Expect = 2e-17 Identities = 278/423 (66%), Gaps = 2/423 (0%) Strand=Plus/Minus Query 8426 GAAATGAATGATTCCAGCGGTCGCTGGAGTTATGTCCGGCAGTTGTATGGTCACGTTTAT 8485 || ||||||||| ||||||| ||||||| | | ||||| ||||| || || || || Sbjct 6562 GAGATGAATGATACCAGCGGGCGCTGGAATCCTTATCGGCAATTGTACGGGCATGTCTAC 6503 Query 8486 ACGGCGAAGACGGGGACTCTGTCGGAGCTTGTGGCCGCGGGTGACCAGTTTAACCTGCAG 8545 ||||| || || || || | | || ||| | ||| |||| |||||| | Sbjct 6502 ACGGCAAAAACAGGCACGGTCGCTGAACTTATCGCCTTTGGTGCGGCGTTTAATGATCCA 6443 Query 8546 CACATCACCCTGGCGGGCTATGAGAAAGAC-ACCCAGACGCCTGCTGATGAACTGGCTGC 8604 ||| |||| | ||||| || || || || | |||||| | ||||| |||| ||| Sbjct 6442 CACCTCACTATCGCGGGATACGA-AACCACTATCCAGACCGCATTAGATGAGCTGGTTGC 6384 Query 8605 AAGCCGTACTGCCCGTGCTGCGGTTTTTATCCGTAACGATCCGGCGCGCCCGACCCAGAC 8664 || || || |||| | ||| | || ||||||||||| | || || || | Sbjct 6383 GGCTCGGCTGGCGCGAAGTGCGATGTTTTTGCGCAACGATCCGGCAAGGCCAACACACAG 6324 Query 8665 CGGGGAGCTGGTGGACATGCTGCCGGCACCGAAAGGCAAACGTTTCACGACGACTGAACA 8724 ||| ||| | | | | | || || ||| || |||| ||||| ||| || || Sbjct 6323 CGGCGAGTTAAACGGCGTATTACCCGCCCCGGCGGGTCAACGCTTCACCTTGACGGAGCA 6264 Query 8725 GCAGACGTTACTTTCCCACGGTGTGGCAACGGCGTATGTGGAAAGCGGCGTGCTGCGTAT 8784 ||| || | |||| | ||| | || || || |||| ||| | |||| ||||||| Sbjct 6263 GCAATCGCTCCTTTTTCGTGGTATCGCCACAGCCAATGTAGAAGGTGGCGCATTGCGTAT 6204 Query 8785 TCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACAGCTACCT 8844 ||| || || |||| || |||| |||||| || || || || ||||| ||||| || Sbjct 6203 TCAACGTGACGTCACAACCTACAAGAAAAACAGTTACGGGGTTGCCGATAATAGCTATCT 6144 Query 8845 TGA 8847 || Sbjct 6143 GGA 6141 >seq813 Length=1717 Score = 120 bits (132), Expect = 8e-23 Identities = 260/376 (69%), Gaps = 11/376 (3%) Strand=Plus/Minus Query 21530 GTCCAGGATTTAATTTGTTTAACTCCGGTTTTTCCTTGCTGAATAAAAATTCCTTTCTCC 21589 ||||||| ||| ||||| |||| ||| || ||||| ||||||||||||||||||| || | Sbjct 1411 GTCCAGGCTTTGATTTGCTTAATTCCAGTCTTTCCCTGCTGAATAAAAATTCCTTGCT-C 1353 Query 21590 AGT-ATTTGATTCCAGTTCATTTTCAATACATCAGAAACTCTGGCAGCACATAAATAAGC 21648 ||| ||||| | ||| ||||| | ||||||||| | || || || || | || || Sbjct 1352 AGTGATTTGTTGCCACTTCATCCCAAGTACATCAGATAATCGAGCGGCGCAAAGGTAGGC 1293 Query 21649 TATTTCCATTGCAGCCCTGACGGCTGGCGT-TGCGTTATTATATATCGCTCTGTACTCTT 21707 ||| ||||| ||| |||| | ||| || ||| || || || || | Sbjct 1292 TATCTCCATAGCAATTTTGAC-TATATCGTCAGCAGCTCGATAAATAGCAAGATATTCCT 1234 Query 21708 CATCGGTAATATATCGATCGCG-TTGA-GGCTTAGGAAACTTATCCACACCAACGCAAGG 21765 |||||||||||| |||||||| |||| |||| |||||| || || |||| || Sbjct 1233 CATCGGTAATATGCCGATCGCGCTTGACAGCTT--TAAACTTCATAACGCCGGCGCAGGG 1176 Query 21766 ATTACCAGGAACATAACCACGTTGATAACTCCAACGAAATACGCGCGACATA-GAGCTGT 21824 |||| | |||||| || | || ||| | ||| ||| | || || |||||| || | Sbjct 1175 ATTAGCTTTAACATAGCCTCTTTCATACCCCCAGCGATAGACACGGGACATACTCGCCAT 1116 Query 21825 GTTCATGATTCGCCTGGACACGGCTTTTTTGCCCACGGGCATCCATATAACGCCGGATAT 21884 ||| || ||||| || ||| | | ||||||| ||||||| | ||||| || Sbjct 1115 -TTCGTGGTTCGCTTGCGTTTTGCTCTGTAGCCCACGTTTATCCATAAACTCCCGGACAT 1057 Query 21885 GTTCTGGCTTTATTGC 21900 | || || |||| ||| Sbjct 1056 GCTCCGG-TTTAATGC 1042 >seq731 Length=3676 Score = 100 bits (110), Expect = 7e-17 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6488 TATTTACACGTTGATTTCGTACAGCCGGAAGAACTGGTGTTTAACCGGGCGAGAATGCGA 6547 ||||||||||||||||| || ||||| || |||| || ||||| ||||| ||||| Sbjct 1284 TATTTACACGTTGATTTTCAGCAACCGGATGAGTTGGTTTTCAACCGCGCGAGGTTGCGA 1225 Query 6548 CGGGCGTTCGTCAAAATTGGTCAGGTGCACATGCGTGATGCGCGGCGACTGGTCATGAAA 6607 |||||||| || | || || |||||||| ||||| ||||| || || |||| ||||| Sbjct 1224 CGGGCGTTTGTGACGATCGGCCAGGTGCATATGCGCGATGCACGACGCTTGGTGATGAAG 1165 Query 6608 CGTGG 6612 || || Sbjct 1164 CGCGG 1160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128352683516082