Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_004348.1 Length=40679 Score E Sequences producing significant alignments: (Bits) Value seq556 387 4e-103 seq439 219 1e-52 >seq556 Length=23517 Score = 387 bits (428), Expect = 4e-103 Identities = 745/1087 (69%), Gaps = 20/1087 (2%) Strand=Plus/Minus Query 31612 TATCGCTATGATGGCGCGGTTAAAACCGTCTCAAACTGGCCTGCAGACAGCGGATTCACG 31671 || || || |||||| |||| ||||| | ||||||||| ||||| || |||| Sbjct 8188 TACCGTTACGATGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACG 8129 Query 31672 CAGTATGAGTTAGGCTCAGTCCGTGACATTACTCGCTTACGTGGGCGTTATGCATGGTCA 31731 || || || | || | || || || || | || || || ||||||| |||| Sbjct 8128 CAATACGATATTGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGT 8069 Query 31732 AAAGACGGTACAGATTCATGGTT--TATCACTGACCTTGAAGATGAATCGCATCCTGACC 31789 |||||||| || ||| || || | |||| || | ||||||||||| || ||||||| Sbjct 8068 AAAGACGGCACCGAT--ATTTTTGGTGTCACCGATTTGGAAGATGAATCTCACCCTGACC 8011 Query 31790 GCTACAGTGCAGAATATCGCGCAGAATCGCAGCCTGACGGGATAATTGGCATAGGTTCAT 31849 ||||| | || |||||||| ||||| || || ||||| || || || || | | | Sbjct 8010 GCTACCGCGCGCTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCT 7951 Query 31850 GGCGAGATTTCATCGTCTGCTTTGGCTCGTCGACGATAGAGTATTTCTCCCTGACAGGCG 31909 |||| ||||| || |||||||||||| |||| || || || ||||| |||||||| || | Sbjct 7950 GGCGCGATTTTATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGG 7891 Query 31910 CAACCACCGTTGGCGCTGCGT--TGTATGTCGCGCAGCCATCGTTAATGGTACAGAAGGG 31967 | || || ||| | || | |||| ||| ||||| | | ||||| |||| || Sbjct 7890 CGGCCGACG--GGCAATCCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGG 7833 Query 31968 GATTGCCGGAACATACTGTAAAACGCCATTCGCTGATTCATATGCATTCATCAGTCACCC 32027 |||||||| || |||| || || | ||| ||| | ||| ||||||| || | Sbjct 7832 CATTGCCGGGACCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGATCATCAGCCATCA 7773 Query 32028 GGCTACTGGCGCACCTTCCGTCTACATCATCGGGTCAGG-GCAGGCTTCACCAATTGCGA 32086 ||| || ||||| || || || ||| | || ||||| |||||| || | ||||| | Sbjct 7772 GGCCACCGGCGCGCCGTCGGTATACCTGATTAA-TCAGGCGCAGGCGACATCGATTGCCA 7714 Query 32087 CGGCCAGTATTGAGAAAATTATCCGCTCATACACGGCTGATGAACTGGCAACCGGGGTGA 32146 |||||| || ||||||||| | ||| ||||| ||||||||||| | || || | Sbjct 7713 CGGCCACCATCGAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCA 7654 Query 32147 TGGAGGCGTTGAGGTTCGATTCGCATGAACTGCTGATTATCCATCTCCCGCGTCATGTGC 32206 |||| | | | ||||| || ||| | || |||||||| | ||||| || ||| Sbjct 7653 TGGAAACCGTCCGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACAGGTGT 7594 Query 32207 TGGTTTACGATGCCTCATCAAGCCAGAACGGGCCGCAATGGTGCGTACTGAAAACCGGTT 32266 || ||| || ||| | | | ||||||||||||||||||| || | |||||||| || | Sbjct 7593 TGTGTTATGACGCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCT 7534 Query 32267 TATACGACGATGTTTATCGCGCCATCGATTTCATGTACGAAGGCAACCAGATTACGTGTG 32326 | || ||| | ||||||| ||||||||| |||| | | | | || | || |||| Sbjct 7533 TTTATCACGCTCCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTG 7474 Query 32327 GCGACAAGTCAGAAGCGGTGACAGGGCAGTTGCAATTCGACAT-TAGTAGTCAGTACGAC 32385 |||| || || || | || || | | || | ||| | | || || || Sbjct 7473 GCGATAAACACGATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAA 7415 Query 32386 AAGCAGCAAGAACATCTGCTGTTTACTCCCATCTTCAAGGCTGATAACGCCAGATGCTTC 32445 || | ||| || ||| | || | ||| || | |||||||| ||||| ||| | || Sbjct 7414 AAACCGCAGGAGCATGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTT 7355 Query 32446 GATCTGGAAGTTGAATCCTCGACAGGCGTTGCGCAGTACGCTGACCGCCTGTTCCTGTCT 32505 ||| | ||| | || | || || ||||| ||||| ||| |||||||| ||||| || Sbjct 7354 GATTTTGAACTGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCC 7295 Query 32506 GCAACCACAGACGGAATCAATTACGGCCGCGAACAGATGATTGAGCAGAATGAGCCGTTT 32565 || ||| | ||||| || ||| |||||||||||||||||| | || |||| ||||||| Sbjct 7294 GCCACCGCCGACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTT 7235 Query 32566 GTGTACGACAAGAGAGTTTTATGGAAGCGTGTAGGTCGTATTCGTC-GATTAA---TCGG 32621 | ||| ||| || || || | ||| ||| ||| | | | || || || |||| Sbjct 7234 GCGTATGACCAGCGAATTCTCTGGCGGCG----GGTTGGCTACATCAGAAAAAATGTCGG 7179 Query 32622 ATTCAAACTGCGGGTAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCT 32681 || ||| | ||||| |||||| ||| || || || || ||||| ||||| || | | Sbjct 7178 CTTTAAAGTACGGGTGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGAT 7119 Query 32682 GGAGTAA 32688 ||| ||| Sbjct 7118 GGAATAA 7112 Score = 105 bits (116), Expect = 2e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34008 TATCAACGCTGGAAGGTCAGAACAGCGCTCTCAATCAGTATTACAACTCAGACCAGTATA 34067 |||| ||||| || || || |||| || ||| | | |||||||||||||||||||| Sbjct 5926 TATCGACGCTCGAGGGACAAAACAAGGCGCTCGGTGATTATTACAACTCAGACCAGTACC 5867 Query 34068 AACAGTTGGCTGATCAGGCTCGCTATCAAAGCCTGAATGCAGCGGAAGCCACCGGAGGTC 34127 || |||| || ||||| || ||||| ||| | || || || ||||| || | Sbjct 5866 GGCAACTGGCCGACCAGGCGCGTTATCAGTCGCTGGCGTCCGCAGAGGCGACCGGCGGAC 5807 Query 34128 TTGGCTCTACAGCAACATCAAACCAAATTGCATCCATTGCACCAACGCTCGGGCAGAACT 34187 | || || || || || || ||| | || |||| || || ||||||||||||||| Sbjct 5806 TGGGGTCAACGGCTACCGGTAATCAACTGGCGGCCATCGCGCCTGCGCTCGGGCAGAACT 5747 Query 34188 GGTTGTCAGGGCAGATGCAAAACTATGGCAA 34218 || | || || || ||||| ||||| ||||| Sbjct 5746 GGCTCTCCGGTCAAATGCAGAACTACGGCAA 5716 >seq439 Length=76666 Score = 219 bits (242), Expect = 1e-52 Identities = 667/1021 (65%), Gaps = 46/1021 (5%) Strand=Plus/Minus Query 15593 GTTGGCGGTTTTGCTTATATCGCTGATATCGCAAAGAACACGCCAAGCGCAGCAAACATC 15652 ||||| || ||||| || | || |||| ||| ||| ||||| || ||||| Sbjct 62021 GTTGGTGGATTTGCCTACCTGATGGAAATCGTCAAGTTCACCCCAAGTAGTGCCAACATG 61962 Query 15653 GTTGCCTATGCAATGCA-GGTTCGCGAAACCGCAATGGAACGCTACGCCATCA--ACCGC 15709 || || ||||| ||| |||||| || |||| ||||| ||||||| ||| || || Sbjct 61961 GTCGCTTATGCC-TGCGTGGTTCGTGATTCCGCCATGGAGCGCTACGGGATCGCTACAGC 61903 Query 15710 ATGACTGAAGCGACGGAATTGCTCTATTCCCGCAACGGAATGACTGCAACGCAGAAGTAC 15769 | | || || | ||| | ||| |||||||||| |||| ||| | |||| Sbjct 61902 AAACCAGATA--ACCGCGTTGTTGTATGCCCGCAACGGTATGAGCACAAGAGAAAAGTTT 61845 Query 15770 GAAGCTATTCAGGCGATTTTCACGCAACTGACAGACCATGCAAAAACCGGATCACGTCGC 15829 ||| | || || || | || | || | || || || | ||||| || ||||| Sbjct 61844 GAATCAATCCAAACGTTGTTTAGCGAAATTACCGATCACGTCAAAACGGGTAAGCGTCGA 61785 Query 15830 GGCCTTCGCTCATTTGGTGAGGTCATGGAGGACTGGGTTGGTGACCTTGATAAGCGATT- 15888 || | || | || || || |||| || ||| ||| || | ||| |||| || Sbjct 61784 GGTGCGAGGCCACTAGGGGACGTGATGGCTGATTGGCTTGACGAAGTAGATCAGCGTTTC 61725 Query 15889 --TGACCCGTCAGGCGAACAACGAGGAATGAGCACAGGGATCCCATCGTTGGACAGGATG 15946 ||| | | || || | ||||||| || || |||||||| ||| | || | Sbjct 61724 AGTGATACTACT--CGGACTA-GAGGAATTAGAACGGGGATCCCGTCGCTAGATGAACTT 61668 Query 15947 CTGTCACCTAAAGGTCTGGTAAAAGGCTCTCTGTTCGTCATTGGCGCTCGCCCTAAGATG 16006 || ||| || || ||||| || || ||| | ||||| || ||||| || || ||| Sbjct 61667 CTCCAACCCAAGGGACTGGTTCGTGGTTCGCTGATGGTCATCGGTGCTCGTCCCAAAATG 61608 Query 16007 GGGAAAACGACGCTATACAGCCAGATGGCAATCAACTGCGCAGTGCATGAGAAAAAACCT 16066 || || || ||| | ||| || |||| | || ||||| |||| || || ||| Sbjct 61607 GGCAAGACAACGTTGTACTCACAATTGGCTCTTAATTGCGCCTTGCACGAAAATTTGCCT 61548 Query 16067 GCCCTGATGTTCAGCCTTGAAATGCCAGGCGACCAGATACTGGAAAAACTGGTAGGGCAA 16126 ||| | ||||||||||||| ||||||| | | || ||| | || || | || || Sbjct 61547 GCCGTACTGTTCAGCCTTGAGATGCCAGACAAGCAAATATTCGAGCGCATGATCGGCCAG 61488 Query 16127 AAGTCAGGTGTTAACCCGAATATTTTTTACCTTCCGGCGACAAATGACGCTGATGACGGC 16186 ||||| | || | ||||||||||| | ||| | |||| ||| || Sbjct 61487 TCATCAGGAATCAATACTGATATTTTTTACTGT--GGC----ACTGACAACGATAGCGAT 61434 Query 16187 TATCAGGGTGATTACGATGGTGACTTCAACAGGGCGATCGAAACAGCCAATCGCTTGAGT 16246 | || | | || | ||| | | || | |||| || | Sbjct 61433 T-TC--GCTTATGCCAATGCTAAA---------GCATTGGAAA------------TGGTT 61398 Query 16247 GAAATTGACATGCTTTACATCGACGACACGCCGGGATTATCTCTGGCTCAAATCGTCAGC 16306 ||| | || |||| | | || ||||| |||||| ||| || ||| || Sbjct 61397 GAATCCGGCAATCTTTTCGTTGATGACACACCGGGAGCCAGTCTAAGCCATATCATCGCA 61338 Query 16307 GAAAGCCGTCGAATCAAGCGAGAAAAAGG--ATGTATTGGCATGATTCTGGTCGATTACC 16364 ||||||||| | || ||||| || || | ||| || ||| | ||||||||||||| Sbjct 61337 GAAAGCCGTAGGATTAAGCGTCAATGCGGTAAGGTA--GGTATGGTGCTGGTCGATTACC 61280 Query 16365 TGACACTAATGACCGCTGAAAAGGCCGATCGCAACGACCTTGCCTACGGCATGATCACCA 16424 |||| || ||| || || || ||||| ||||||||| | || ||||| || || |||| Sbjct 61279 TGACGCTTATGCGGGCAGAGAAAGCCGACCGCAACGACTTGGCGTACGGGATTATAACCA 61220 Query 16425 AAGGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTTGTTGTGCTTCTGACGCAGCTTA 16484 | ||||| |||||||||||||| |||||||||||| |||| ||||| || || ||| | | Sbjct 61219 AGGGACTCAAGAACCTTGCCAAGGAGCTTGATTGCATTGTGGTGCTGCTAACACAGTTAA 61160 Query 16485 ACCGCGCACTGGAAAACCGAACCAATAAACGCCCATTACCAAGTGACTCACGAGATACAG 16544 |||||| || || || || || |||||||| ||||||||| ||||||| | Sbjct 61159 ACCGCGACCTTGAGAAACGTGTTAACAAACGCCCCCAGCCAAGTGACAGCAGAGATACTG 61100 Query 16545 GGCAGATTGAACAGGATTGCGATTATTGGGTTGGGATCCATCGTGAAGGTGCTTTTGATG 16604 | ||||||||||| || || ||||| ||| | |||||| | || |||||||||| ||| | Sbjct 61099 GCCAGATTGAACAAGACTGTGATTACTGGCTGGGGATCTACCGGGAAGGTGCTTATGACG 61040 Query 16605 A 16605 | Sbjct 61039 A 61039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130048650264942