Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq53 140 2e-28 seq308 136 3e-27 >seq1 Length=10097680 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| ||| | | || ||||| | || || ||||| ||||| |||||||| Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | | ||||| ||||||||||||||| | ||||||||||| || || ||| Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| ||||||| ||| ||| |||| || || ||| | || || Sbjct 7547495 ATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 7547436 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 || || ||||| ||||| || || |||||||| || ||||||||||| |||| Sbjct 7547435 TCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTG 7547384 >seq53 Length=1361919 Score = 140 bits (154), Expect = 2e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | ||| | || |||||||| | ||| || ||||| |||||||||||||| Sbjct 1239989 TGCCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCG 1239930 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | ||||| |||||||| |||||| | |||||||| || ||||| | Sbjct 1239929 AGAGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGG 1239870 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||| || || || || ||| || || |||| | || ||| | ||| Sbjct 1239869 GAATACCTTCCTTATCTTGGATCTTAGCT-TTAACGTTTTCAACAGTGTCGGAAGGCTCT 1239811 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||||||||| || |||| |||||| ||||||||||||||| Sbjct 1239810 ACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCATA 1239760 Score = 132 bits (146), Expect = 3e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | || || ||||| ||||| |||||||| ||| | | |||||||| Sbjct 1241543 ACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACCGTCTTCT 1241484 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||||||||| | |||||||| || || || ||||| |||||||| || | Sbjct 1241483 AATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTGA 1241424 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || || |||| || ||||| |||||| || || ||||||| ||| Sbjct 1241423 ATTTTTGCT-TTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAATGGATTT 1241365 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| |||||||||||| |||||||| Sbjct 1241364 GCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 131 bits (144), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| |||||||| || || || |||||||| || || |||||| ||| | | | |||| Sbjct 1241775 TAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTGCGCCCGTC 1241716 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| |||||||||||||| | |||||||| ||||| ||| | ||| ||||| || || Sbjct 1241715 TTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCTTCCTTATC 1241656 Query 15271 -ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | ||||||| || || |||| || ||||| ||||| || || ||||| | Sbjct 1241655 TTGGATTTTTGCT-TTAACCGTTTCGATAGTATCCGACGGCTCTACCTCCAAAGTAATAG 1241597 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || |||| |||||| ||||| |||||||| Sbjct 1241596 TTTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 Score = 129 bits (142), Expect = 4e-25 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | || || || ||||||| |||||||| ||| | | ||||| Sbjct 1240200 AACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCCGTCT 1240141 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 ||||||||||||||||| | |||||||| || || || ||||| |||||||| || Sbjct 1240140 TCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCT 1240081 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAATGG 15329 |||||| ||| || || |||| || ||||| | || |||||| || || ||||||| Sbjct 1240080 TGAATTTTTGCT-TTAACGTTTTCGATAGTATC-CGATGGTTCTACTTCCAAAGTAATGG 1240023 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || |||| |||||| ||||| || ||||| Sbjct 1240022 TTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | ||| || ||||| || || || || ||||| ||||| |||||| Sbjct 1234462 CCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAG 1234403 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| |||||||| |||||| | |||||||| || ||||| ||| Sbjct 1234402 AGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 1234343 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| || || || || ||| || || |||| ||||||||| | || || Sbjct 1234342 ATACCTTCCTTATCCTGGATCTTAGCT-TTGACGTTTTCAATGGTATCGGAAGGCTCGAC 1234284 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||||||||| |||| |||||| || || ||||||||| Sbjct 1234283 TTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCATA 1234235 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | || || ||||| ||||| ||||| || ||| | | ||||| Sbjct 1240428 AACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACCGTCT 1240369 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||||||||| | |||||||| || ||||| ||||| |||||||| || Sbjct 1240368 TCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTATCT 1240309 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAATGGT 15330 |||||| ||| || |||| || ||||| | || |||||| || || |||||||| Sbjct 1240308 TGAATTTTTGCCTTAACGTTTTCGATAGTATC-CGATGGTTCTACCTCCAAAGTAATGGT 1240250 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||| |||||| ||||| |||||||| Sbjct 1240249 TTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 122 bits (134), Expect = 6e-23 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | || | || ||| || || | || || ||||||||||| |||||||| Sbjct 1232572 TGCCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAG 1232513 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | | | ||||| | |||||||||||| | |||||||| || || ||| | Sbjct 1232512 ACAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAG 1232453 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||||||||| || |||||| |||||| |||| || ||||| ||| Sbjct 1232452 GAATACCTTCTTTGTCTTGGATCTTTGCT-TTTACATTTTCAATTGTATCAGATGGTTCC 1232394 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || ||||| || || ||||| || |||| || ||||| || |||||||| ||| Sbjct 1232393 ACTTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCATTTTT 1232340 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | ||| | ||| || ||||| | || || || |||||||| |||||||| Sbjct 1232798 CCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1232739 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | |||||||||| ||||| |||||| | || ||||| ||||| || ||| Sbjct 1232738 AATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGG 1232679 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||| || ||| ||| | || || |||||| | || || Sbjct 1232678 ATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACC 1232619 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || ||||| || |||| || || |||||||||||||| Sbjct 1232618 TCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | || || ||||| | || || || |||||||| |||||||| Sbjct 1239759 CCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1239700 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||||| ||||| |||||| |||| ||||||||||| || ||| Sbjct 1239699 AATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGG 1239640 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || ||| || ||| || ||| | || || |||||| | || || Sbjct 1239639 ATTCCTTCCTTATCTTGAATCTTAGCT-TTAACATTCTCAATAGTATCGGAAGGCTCAAC 1239581 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || ||||| | ||||| || |||| || || || || || ||||| || Sbjct 1239580 CTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 1239530 >seq308 Length=190705 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| ||| | || || | ||| | ||||| |||||||| || || ||||| | Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGAT 86681 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| |||||||| |||||| | ||||| |||||||||||| |||| Sbjct 86682 AATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGA 86741 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| |||||||| ||| ||| || ||| |||| || ||||| || || Sbjct 86742 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGACC 86801 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | |||||||| || || || || |||||||||||||| |||||||| Sbjct 86802 TCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATATT 86851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362171912388591