Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq804 318 1e-82 >seq804 Length=1783 Score = 318 bits (352), Expect = 1e-82 Identities = 572/830 (69%), Gaps = 18/830 (2%) Strand=Plus/Minus Query 23179 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGttttttttATCAATTACTTACATG 23238 ||||||||||||||||||||| | | || | ||| | ||||| |||| |||||||| Sbjct 842 GACACCATCCCTGTCTTCCCCGCC-TCATCAGCGGGGTATTTTT-TCAACCACTTACAT- 786 Query 23239 CAATCAAAAGT--AAAAACAGTCACTTATCGAAAGCTGTAAGGGTTTGGAGTGGTTTCAA 23296 ||||||| | ||||||| | | || ||||||| ||||| | || | |||||| Sbjct 785 CAATCAATCTTTAAAAAACAATAAGTTGAA-AAAGCTGCAAGGGGTATGAACGTTTTCAA 727 Query 23297 AATTTCTTGAGTGTGGACACTATGTGGACACTCAGAGGGGGAAATTTATAACGTCACTCC 23356 || || ||||||||| || | |||||||| || | || || ||| Sbjct 726 AAGTTGCTGAGTGTGGGCAATCCGTGGACACCT-----------TTAAGCACC-CAATCC 679 Query 23357 GCCTTTTAGTGGATTCAGAGCGACGGCATTTTGCAGGTAGTCAGGCGCAAGGTGCGCATA 23416 |||||||||||||| | ||| ||||||||||| || ||||| || || | || ||||| Sbjct 678 CCCTTTTAGTGGATTTAAAGCCACGGCATTTTGAAGATAGTCGGGTGCTAAATGAGCATA 619 Query 23417 GGCCATCGTCTGCTGAATGCTCGCATGTCCCAGAATCTGTTGCAGTGCGATTATATTGCC 23476 |||||| || ||||| || | |||||||||| ||| | ||||||||| || ||||| || Sbjct 618 GGCCATTGTTTGCTGGATATTGGCATGTCCCAAAATTTCTTGCAGTGCAATAATATTACC 559 Query 23477 CCCGTTCATCATGAAATGGCTTGCGAATGTATGCCGCAGGATGTGGGTTGCCTGATTGGG 23536 || |||||||| ||||| || || |||||||| || || | || |||||||| | | Sbjct 558 ACCATTCATCATAAAATGACTAGCAAATGTATGACGTAGCACATGTGTTGCCTGGCCGTG 499 Query 23537 TGGTATATCAGGTTTCACTCTGCGTAAAATCCCGCAAAATTTCTCATAATCAACTTTGAA 23596 ||||| ||| ||||||||| || | | ||| ||||||||||| || |||||||| Sbjct 498 TGGTAGATCGGGTTTCACTGAACGCAGCTTTATGCAGAATTTCTCATAGTCTACTTTGAA 439 Query 23597 TAATTTGGCGCTTGCCTCCTCTTTAACTTTTTTCTCCAGTTCCTCAGAAATCGGCACGGT 23656 || | ||||| | | |||||| | ||||||| |||| || |||||||| Sbjct 438 CAAATGACTACTTGCATGCATTTTAACCTCACCTTCCAGTTGAGCAGATATTGGCACGGT 379 Query 23657 TCGCTTTTTACCGTTTTTGGTTTTCAGGAAGGTAACCCTGCAATTTGTAATCTGTGCTGG 23716 || || || || || || |||| || || ||||| | | || || || | || Sbjct 378 GCGTTTCTTGCCATTCTTAGTTTCAAGAAATGTAACTCGCCCTTTCACGATTTGCGTAGG 319 Query 23717 TTTTAGCGTGGCAACTTCCGTCCATCTTCCTCCAGTGCTCAGACATAAAAGCGCGACAAG 23776 | | | ||| |||||| ||| | ||| || || || || |||| | || | ||| Sbjct 318 TGTCAAGGTGCTCACTTCCCCCCACCGTCCACCGGTACTTAGGCATAGCAAGGCAATAAG 259 Query 23777 TAAGTCATCACCAGCCAAAACATTTAACAGTTTTTCGATTTCTGCTTTTTCCAGGAACGT 23836 ||||| |||| ||||||| || || || | |||||| | || | ||| || Sbjct 258 CCGCTCATCTCCAGACAAAACAGATAGTAGATTATTGATTTCATCAACATCAAAGAATGT 199 Query 23837 CATTTCAGGGTTGGCCTCCGCCAGTGGCGGCAGTCCGTGAATTGGGTGTTGCCCGGAAAA 23896 ||| || || || || ||||||||||| | ||| || | |||| ||| || || || Sbjct 198 CATCTCCGGATTTTTTTCTGCCAGTGGCGGTAATCCATGTAGCGGGTTTTGTCCTGAGAA 139 Query 23897 TTCATCCAATTGAATTAATTTTGTGAACATGCCGGATAATCGGTACATGTCACGGTTTAT 23956 ||| |||| | || | || ||||| || || |||| || | || ||||| || Sbjct 138 TTCGTCCAGCTTTATCAGCGCTGAAAACATCCCTGAAAATCTATAAAGATCTCGGTTAAT 79 Query 23957 CGTTGCGGCACTGATACCATCACGTAGTCGTATGGAACGATAATCCATCA 24006 || || |||||||| ||| || || ||| || ||| | ||||||| Sbjct 78 AGTGGCAGCACTGATGCCAGCAGATAAGCGTTTGCTACGGTGCTCCATCA 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98206074570780