Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq53 98.7 8e-16 seq1 86.0 5e-12 >seq53 Length=1361919 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || ||||| | ||| |||| ||||||||||| |||||||| ||||||||||| | | Sbjct 1232798 CCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1232739 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| |||| || | ||||||||| || | || | | ||| ||||| || Sbjct 1232738 AATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGG 1232679 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || ||| || || || | | | ||||||| |||||| Sbjct 1232678 ATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACC 1232619 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || ||||| || || || || ||||||||||||||||| Sbjct 1232618 TCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||||| ||||| |||||||| | ||||||||||| | || | |||| Sbjct 1240200 AACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCCGTCT 1240141 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || | ||||| || ||| |||| | | ||||||||| || | || ||||| || Sbjct 1240140 TCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCT 1240081 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 |||||| ||| || | ||| |||||| || || ||| | ||||||||| Sbjct 1240080 TGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAATGGTT 1240021 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||| ||||| || ||||| Sbjct 1240020 TTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || ||||| | || |||| ||||||||||| |||||||| ||||||||||| | | Sbjct 1239759 CCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1239700 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| |||| || ||||||||||| || | || | | || ||||| || Sbjct 1239699 AATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGG 1239640 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || ||| || ||| || | | | ||||||| |||||| Sbjct 1239639 ATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACC 1239580 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 || | ||| | ||||| || || || || || || || || ||||||||||| Sbjct 1239579 TCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAA 1239527 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||||| || || || || || |||||||| |||| | || |||| Sbjct 1240428 AACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACCGTCT 1240369 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 ||||||||||| || ||| | || | | |||||| || || | || ||||| || Sbjct 1240368 TCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTATCT 1240309 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 |||||| || || | ||| |||||| || || || | ||||||||| Sbjct 1240308 TGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAATGGTT 1240249 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || |||||||| ||||| ||||||||| Sbjct 1240248 TTGCCAGTCAAAGTTTTAACAAATATTTGCATT 1240216 >seq1 Length=10097680 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||||||| | | |||| ||||| || || || || || ||||||||||| | | Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | || |||| ||||| || || | || | | |||||||| || Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||||||||| |||||| || || | | | ||| ||| |||||| | Sbjct 7547495 ATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 7547436 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | ||||| ||||| || || | |||||| || |||||||||||||| Sbjct 7547435 TCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 7547386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414564458147494