Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq439 246 1e-60 >seq439 Length=76666 Score = 246 bits (272), Expect = 1e-60 Identities = 415/598 (69%), Gaps = 2/598 (0%) Strand=Plus/Minus Query 4634 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 4693 ||| ||||| ||||| ||| |||| |||||| | ||| |||||| |||| || || Sbjct 70427 CCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAAA 70368 Query 4694 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 4753 ||| || || ||| ||||| | | ||||| || || || || |||| | ||| | Sbjct 70367 CTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGTT 70308 Query 4754 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 4813 || || |||||||| |||||||| ||||||||||| ||||| | ||| || ||||| | Sbjct 70307 GTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCCC 70248 Query 4814 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATGGCCTCGAAACC 4873 ||| ||||||||||| |||| ||||| ||||| || ||||||| ||| | || || || Sbjct 70247 CGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGCC 70188 Query 4874 ACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAAGGCCGTT 4933 | || | || || || || || || || ||||| || || || | ||||| || Sbjct 70187 ATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCAG 70128 Query 4934 ACCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 4993 || ||||| || |||||||| ||||| || |||||| ||||| | || Sbjct 70127 CCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATAT 70068 Query 4994 GATCGGGGATTCAGTAACA-TTAACGCCGGAAGTGAACTCAAAGAGGGTTCTGGCGTCGT 5052 ||| ||| || |||| ||||| || | |||||||||||| || ||| || | | Sbjct 70067 GATGGGGACGTCGATAACGGTTAAC-CCTGTAGTGAACTCAAACAGTCGTCTTGCTACCT 70009 Query 5053 TCTCGTACTGTTTTCCCCAGGCCAGAGCCTTAGCGTTAACTTCCGGAGCCACACCGGTGC 5112 |||| | ||||||||| | || | | | || || ||||| |||| ||||| | Sbjct 70008 CTTCGTTTTCTTTTCCCCATTCTAGCGGCCTTGCCTTCACTTCGGGAGATTGCCCGGTAC 69949 Query 5113 AAACCTCAGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTG 5172 ||| ||| |||| ||| ||| |||||| ||| ||| | || | ||| || || |||| Sbjct 69948 AAATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCCTG 69889 Query 5173 AGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAA 5230 | || || | | |||||| | | | ||||| ||||| ||| |||| || || || Sbjct 69888 AACGTGGGCTGGAAATCACGCAGGAAGCCTCTGAGGCGGTTATGGCGCCAAGGCGCAA 69831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185250767971704