Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_004827.1 Length=43033 Score E Sequences producing significant alignments: (Bits) Value seq439 122 2e-23 >seq439 Length=76666 Score = 122 bits (134), Expect = 2e-23 Identities = 400/612 (65%), Gaps = 26/612 (4%) Strand=Plus/Minus Query 4055 GGATTTTTACCGAACCCGGTAGAGCTTGGGTTAAAATCCAAAACTCTTTTGTT------- 4107 |||||||| ||||| |||| | ||| || ||||| || | | |||||| | Sbjct 25945 GGATTTTTGCCGAAGCCGGAGGCGCTGGGATTAAAGTCGAGCAATCTTTTTGTATTCTGG 25886 Query 4108 --TGTGTCATCAAAGCGCAATCGCCCCATCAAATCCGCCACTTTGTAAATTTCCGTTTTT 4165 || | | |||| ||| | ||| ||||| | || || ||||||||||| || ||| Sbjct 25885 CCTGAGCCTTCAATGCGGATTCGACCCATAACGTCGGCGACTTTGTAAATCTCACCTTTA 25826 Query 4166 GAGCTACCTTGTATATCCAAGCGTTCTACGAATTCATCTTTTTGCTGCTGTTCTGTCATG 4225 |||| ||||| ||||| | ||||| || || || ||| ||||| |||| |||| Sbjct 25825 GAGCCGCCTTGAATATCAAGACGTTCAACTAAATCCTCTCCAACCTGCTTTTCTTCCATG 25766 Query 4226 TGAGACAATAGAACAACATCTTTACCAAAAC---TGCGCAATTGTGTTAGCCATGAACTG 4282 |||| | || | || |||||||||||| | ||| | |||||||| ||| Sbjct 25765 TGAGCTATGAGGATAATATCTTTACCAAATGATTTAAGCAGAT---TTAGCCATC--CTG 25711 Query 4283 AATG-CGTGTTTT-AGTGCGCCGTAACCTTGTTGCGTTAACTCACCACCGCCGCGCGTTG 4340 || | || ||| | || || |||| ||| | || || || || | | ||| Sbjct 25710 AAAATCCTGCTTTCAAGGCACCAAAACCCTGTAAAGATAGCTGTCCGCCAATTCCC-TTG 25652 Query 4341 TTCCTTTAACATTACGCCGAACAATATCTGCCGTTAAAAT--ATCCAGCGCGCGCCCCAC 4398 | || | || || | |||| || || | ||| | ||| ||||| || ||| | Sbjct 25651 AACTTTGGATTTTT-GCGTATCAAT-TCGGCAG--AAAGTGAATCGAGCGCCCGACCCGC 25596 Query 4399 GGTATCAACAATAATTGTGTCGTAAGTTGCTAAGTCGTCTTCGGTAATGTTTGTTACATC 4458 ||||||||| | || || | |||||| || ||||| | |||| || | || || Sbjct 25595 GGTATCAACCACAACGGTATTGTAAGTCGCCAAGTCAGCAGCGGTGATTTGCTCTATTTC 25536 Query 4459 AGACCAACTATCAACCTGCACGGTATCTTTGCGGAATTGTGAGCGATAAGATCCGTGATC 4518 ||| | | | || || |||||||| || || ||||||||||||| |||| ||| Sbjct 25535 GCTCCAGTTGGCTATTTGGACTGTATCTTTACGAAACTGTGAGCGATAAGCACCGTTATC 25476 Query 4519 AAAGTCGAGTAGTAATGGTCTTGAAGCTGTAAATGCGGTTGAGGTTTTGCCTGCCCCCGG 4578 ||||||||| | | || ||| ||||| || | || ||||| || ||||| Sbjct 25475 AAAGTCGAGCAACACAGGAGAATCAGCGGTAAAGGCCATGGATGTTTTCCCCAATCCCGG 25416 Query 4579 GGGAGCGTATAAACAAACAATAATATTTTTAACCTCGATCGGTTGTGCTGATGAAATAAT 4638 || ||||| | ||| || | ||||| || ||||| ||||| | || | || || Sbjct 25415 TGGTGCGTAAAGACAGGTGATTAGGTTTTTTACTTCGATAGGTTGGGATGCTTTAACTAT 25356 Query 4639 TTTCAGTGCCAT 4650 ||| |||||||| Sbjct 25355 TTTTAGTGCCAT 25344 Score = 102 bits (112), Expect = 2e-17 Identities = 175/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 13458 GACTACTTAACGCTGATGAAAGCCGAAAAAGCCGAGCGTAACGACTTAGCTTACGGGCAA 13517 || ||| | ||||| ||| || || |||||||| || |||||||| || |||||| Sbjct 61286 GATTACCTGACGCTTATGCGGGCAGAGAAAGCCGACCGCAACGACTTGGCGTACGGGATT 61227 Query 13518 GTTACCAAAGAATTAAAAAATCTTGCGCGTGAAATGGATTGTGTGGTTTTGCTTTTAACT 13577 | ||||| | | | || || ||||| || | ||||| | || |||| |||| Sbjct 61226 ATAACCAAGGGACTCAAGAACCTTGCCAAGGAGCTTGATTGCATTGTGGTGCTGCTAACA 61167 Query 13578 CAACTGAATCGTGGGCTTGAAAGTCGCTCAGATAAACGACCAATGCCAAGTGACAGCCGT 13637 || | || || | ||||| | || | ||||| || ||||||||||||| | Sbjct 61166 CAGTTAAACCGCGACCTTGAGAAACGTGTTAACAAACGCCCCCAGCCAAGTGACAGCAGA 61107 Query 13638 GATACAGGACAAATTGAACAAGAGTGTGATTACTGGTTGGGACTTTATAAAGAATCCGTT 13697 ||||| || || ||||||||||| |||||||||||| |||| | || ||| | | Sbjct 61106 GATACTGGCCAGATTGAACAAGACTGTGATTACTGGCTGGGGATCTACCGGGAAGGTGCT 61047 Query 13698 TACAACGAAAACGC 13711 || |||||||||| Sbjct 61046 TATGACGAAAACGC 61033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137581302579690