Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1 154 9e-33 seq53 120 2e-22 >seq1 Length=10097680 Score = 154 bits (170), Expect = 9e-33 Identities = 176/235 (75%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| || || | ||||||||||||||||| ||||| ||||||||||||||||| Sbjct 7547616 ACCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGA 7547557 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | | || |||||||| || ||| || || ||||||||||| || | || Sbjct 7547556 CAAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGG 7547497 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||| ||||| || || | ||| || || ||| ||| |||||| || | Sbjct 7547496 AATGCCCTCTTTGTCCTGAATTTTGGCC---TTGACATTTTCAATAGTGTCGGAAGGCTC 7547440 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 ||| |||| ||| || ||||| || ||||||||||| |||||||||||||| ||| Sbjct 7547439 AACTTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTT 7547385 >seq53 Length=1361919 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| |||||||| || |||||||||||||||||||||||||| || | || ||| Sbjct 1232552 ACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCTTCC 1232493 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| || ||| ||| || ||||| ||||| || | || || |||||||| || Sbjct 1232492 AGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCTTGG 1232433 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| |||||| ||| ||| || || |||| || || | ||| || ||||| Sbjct 1232432 ATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCACTTCTAAAGTGATTGTTTTG 1232373 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 || || | || |||||||| |||||||| |||| Sbjct 1232372 CCAGTCAATGTCTTTACGAAGATTTGCATTTTTA 1232339 Score = 114 bits (126), Expect = 8e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || |||||||| |||||||| || || ||||| ||||| |||||||| || | | || | Sbjct 1239978 AAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGA 1239919 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 || |||||||| || ||| || || ||||| |||||||| | ||| || ||||| Sbjct 1239918 CCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCC 1239859 Query 33272 TTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || || ||| ||| || ||| || |||||| || | || |||| ||| Sbjct 1239858 TTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTA 1239799 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || | |||||| || ||||||||||| Sbjct 1239798 ATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 114 bits (126), Expect = 8e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||||||||||||||| || || ||||||| ||||||||| || | | || | | Sbjct 1240203 CGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCCG 1240144 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || ||||| || ||| ||| || ||||| ||||| || | || || |||||||| Sbjct 1240143 TCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTA 1240084 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| || || || |||| || |||| ||| || Sbjct 1240083 TCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAATG 1240024 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||||||| || | |||||| || || || |||||| Sbjct 1240023 GTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCATG 1239988 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||||||||||| || || ||||| |||||||||||||| || | | || | | Sbjct 1241549 CGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACCG 1241490 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || ||||| || ||| ||| || ||||| ||||| || | || || |||||||| Sbjct 1241489 TCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTA 1241430 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| || || || |||| || |||| ||| || Sbjct 1241429 TCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAATG 1241370 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | ||| || || | ||||||||| || |||||||| Sbjct 1241369 GATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 104 bits (114), Expect = 1e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||| | || || || ||||||||||| || || || |||||||||||||||||||| Sbjct 1232799 ACCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGA 1232740 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| || | ||| || || || || ||| || |||||||| || || || | || Sbjct 1232739 CAATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGG 1232680 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || |||| |||| | || | | ||| || ||| || | Sbjct 1232679 GATTCCTTCCTTATCTTGAATCTTAGCCT---TAACATTCTCAATAGTATCGGAAGGCTC 1232623 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||| |||| || || ||||| || || | || || || |||||||||||| Sbjct 1232622 AACCTCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCATG 1232571 Score = 102 bits (112), Expect = 5e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || ||||| ||||||||||| || || || ||||||||||||||||||||||| || | Sbjct 1239750 AAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGC 1239691 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 ||| || | || || ||| |||||||||||||| || || | || || ||||| Sbjct 1239690 CCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGGATTCCTTCC 1239631 Query 33272 TTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || || |||| ||| || | | ||| || ||| || | ||| |||| || Sbjct 1239630 TTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTG 1239571 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | ||||| || || | || || ||||| || ||||| || Sbjct 1239570 ACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 1239530 Score = 102 bits (112), Expect = 5e-17 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||||||||| || || ||||| ||||||||||| || || | | | | | Sbjct 1240431 CGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACCG 1240372 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| || || ||| ||| || ||||| |||||||| | || || |||||||| Sbjct 1240371 TCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTA 1240312 Query 33275 TCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || || | ||| || || ||| || || || |||| || |||| ||| Sbjct 1240311 TCTTGAATTTTTGCC---TTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTA 1240255 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || | |||||| || || |||||||| Sbjct 1240254 ATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318771185696598