Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq804 282 9e-72 >seq804 Length=1783 Score = 282 bits (312), Expect = 9e-72 Identities = 567/831 (68%), Gaps = 21/831 (3%) Strand=Plus/Minus Query 22550 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGttttttttATCAATCACTTACATC 22609 ||||||||||||||||||||| | | || | ||| | ||||| |||| |||||||||| Sbjct 842 GACACCATCCCTGTCTTCCCCGCC-TCATCAGCGGGGTATTTTT-TCAACCACTTACATC 785 Query 22610 GGTT--TCCGTAAGAAAACAGTAACTTAAGAAAACCTATAAGGGACTGGAAGGGCTACAA 22667 | || ||| |||||| ||| || | |||| || ||||| ||| | | ||| Sbjct 784 AATCAATCTTTAA-AAAACAATAAGTTGA-AAAAGCTGCAAGGGGTATGAACGTTTTCAA 727 Query 22668 A-GTT-CTGAGAGTGTGGACACTATGTGGACACTCAGAAGGGAAATTTATAACGTCACTC 22725 | ||| ||||| ||||| || | |||||||| ||| || || || Sbjct 726 AAGTTGCTGAG--TGTGGGCAATCCGTGGACACCTTTAAGC----------ACC-CAATC 680 Query 22726 CGCCTTTTAGAGGATTCAGCGCGACGGCATTTTGCAGGTAGTCAGGCGCAAGGTGCGCAT 22785 | |||||||| ||||| | || ||||||||||| || ||||| || || | || |||| Sbjct 679 CCCCTTTTAGTGGATTTAAAGCCACGGCATTTTGAAGATAGTCGGGTGCTAAATGAGCAT 620 Query 22786 AGGCCATCGTCTGCTGAATGCTCGCATGTCCCAGAATCTGTTGCAGTGCGATTATATTGC 22845 ||||||| || ||||| || | |||||||||| ||| | ||||||||| || ||||| | Sbjct 619 AGGCCATTGTTTGCTGGATATTGGCATGTCCCAAAATTTCTTGCAGTGCAATAATATTAC 560 Query 22846 CCCCATTCATCATGAAATGGCTTGCGAATGTATGCCGCAGGATGTGGGTTGCCTGATTGG 22905 | ||||||||||| ||||| || || |||||||| || || | || |||||||| | Sbjct 559 CACCATTCATCATAAAATGACTAGCAAATGTATGACGTAGCACATGTGTTGCCTGGCCGT 500 Query 22906 GTGGTATATCTGGCTTCACTCTGCGTAAAATCCCGCAAAACTTCTCATAATCAACTTTGA 22965 |||||| ||| || |||||| || | | ||| || |||||||| || ||||||| Sbjct 499 GTGGTAGATCGGGTTTCACTGAACGCAGCTTTATGCAGAATTTCTCATAGTCTACTTTGA 440 Query 22966 ATAATTTAGCGCTGGCCTCCTCTTTAACTTTTTTCTCCAGTTCCTCAGAAATCGGCACGG 23025 | || | | || || | | |||||| | ||||||| |||| || ||||||| Sbjct 439 ACAAATGACTACTTGCATGCATTTTAACCTCACCTTCCAGTTGAGCAGATATTGGCACGG 380 Query 23026 TTCGCTTTTTACCGTTTTTGGTTTTCAGGAAGGTAACCCTGCAATTTGTAATCTGTGCTG 23085 | || || || || || || |||| || || ||||| | | || || || | | Sbjct 379 TGCGTTTCTTGCCATTCTTAGTTTCAAGAAATGTAACTCGCCCTTTCACGATTTGCGTAG 320 Query 23086 GTTTTAGCGTGGCAACTTCCGTCCATCTTCCTCCAGTGCTCAGACATAAAAGTGCGACAA 23145 || | | ||| |||||| ||| | ||| || || || || |||| | || | || Sbjct 319 GTGTCAAGGTGCTCACTTCCCCCCACCGTCCACCGGTACTTAGGCATAGCAAGGCAATAA 260 Query 23146 GTAAGTCATCACCAGCCAAAACATTTAACAGTTTTTCGATTTCTGCTTTTTCCAGGAACG 23205 | ||||| |||| ||||||| || || || | |||||| | || | ||| | Sbjct 259 GCCGCTCATCTCCAGACAAAACAGATAGTAGATTATTGATTTCATCAACATCAAAGAATG 200 Query 23206 TCATTTCAGGGTTGGCCTCCGCCAGTGGCGGCAGTCCGTGAATTGGGTGTTGCCCGGAAA 23265 |||| || || || || ||||||||||| | ||| || | |||| ||| || || | Sbjct 199 TCATCTCCGGATTTTTTTCTGCCAGTGGCGGTAATCCATGTAGCGGGTTTTGTCCTGAGA 140 Query 23266 ATTCATCCAATTGAATTAATTTTGTGAACATGCCGGATAATCGGTACATGTCACGGTTTA 23325 |||| |||| | || | || ||||| || || |||| || | || ||||| | Sbjct 139 ATTCGTCCAGCTTTATCAGCGCTGAAAACATCCCTGAAAATCTATAAAGATCTCGGTTAA 80 Query 23326 TCGTTGCGGCACTGATACCATCACGTAGTCGCATGGAACGATAATCCATCA 23376 | || || |||||||| ||| || || || || ||| | ||||||| Sbjct 79 TAGTGGCAGCACTGATGCCAGCAGATAAGCGTTTGCTACGGTGCTCCATCA 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104465151855252