Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq53 122 6e-23 seq308 118 8e-22 seq1 100 2e-16 seq27 84.2 2e-11 >seq53 Length=1361919 Score = 122 bits (134), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCAT 43967 ||| || ||||| || || |||||||| ||||| |||||| | | || ||| | | Sbjct 1241775 TAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTG-CGCCCGT 1241717 Query 43968 CGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT 44027 | ||||||||||| || ||||| ||||| || || || || ||| | |||||| |||| Sbjct 1241716 CTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCTTCCTTAT 1241657 Query 44028 CTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTG 44087 || |||||| ||| ||| | | | |||||| | |||||| || || | ||||| | Sbjct 1241656 CTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACCTCCAAAGTAATAG 1241597 Query 44088 TTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || ||||| || ||||| |||||||| Sbjct 1241596 TTTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| |||||||| || || ||| |||||||| ||||||||| | ||| |||| Sbjct 1234448 TAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCATC 1234389 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||||||||| || || || ||||| || |||||||| | || | |||||| ||||| Sbjct 1234388 TTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATC 1234329 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 || || |||||| | ||| ||||| | ||||| || || | || || || Sbjct 1234328 CTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATGGT 1234269 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||| ||||| || || || |||||||| Sbjct 1234268 TTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| | || ||||| || ||||| || || | ||| | || Sbjct 1240428 AACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACCGTCT 1240369 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| ||||| || ||||| ||||| || |||||||| |||| | ||||||||||||| Sbjct 1240368 TCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTATCT 1240309 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||||| || || | | | |||||| | || || || || | ||||| ||| Sbjct 1240308 TGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAATGGTT 1240249 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| || |||||||||||||| Sbjct 1240248 TTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970 ||||||||| | || ||||| || ||||| ||||| | | || || | || | Sbjct 1241544 CACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTG-CGACCGTCTT 1241486 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | |||||||| || ||||| ||||| || ||||| || |||| | ||||||||||||| Sbjct 1241485 CTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTT 1241426 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||||||| ||| || | | | |||||||| || || || || | ||||| | || Sbjct 1241425 GAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAATGGATT 1241366 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || ||||| || ||||| |||||||| Sbjct 1241365 TGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATC 43968 ||||||||||| | || || ||||| | ||| ||||| | | || || | || Sbjct 1240200 AACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGC-CGTC 1240142 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || |||||||| || ||||| ||||| || ||||| || |||| | |||||||||||| Sbjct 1240141 TTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATC 1240082 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||||||| ||| || | | | |||||| | || || || || | ||||| || Sbjct 1240081 TTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAATGGT 1240022 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||| || || ||||| || ||||| || |||||| Sbjct 1240021 TTTTCCAGTCAAAGTTTTAACAAAGATCTGCATG 1239988 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||||||||| || || || ||||| || |||||||| | || | |||||| | Sbjct 1239917 CATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCT 1239858 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| || || ||| || | ||||||| || | ||||| || || | |||| Sbjct 1239857 TATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTAA 1239798 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || || ||||| || ||||| |||||||| Sbjct 1239797 TGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 >seq308 Length=190705 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||| ||| | ||||| | ||||| |||| |||||||||||||||||||| Sbjct 86621 ACCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGA 86680 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| || |||| |||||||||||||| || || ||||| ||||| ||||| | || Sbjct 86681 TAATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGG 86740 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| || ||| || ||| || | ||| |||||| | ||||| || Sbjct 86741 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGAC 86800 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | || || ||||| || ||||| Sbjct 86801 CTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCAT 86848 >seq1 Length=10097680 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||| ||| | | |||||||| | || ||||| || ||||| ||||| Sbjct 7547616 ACCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGA 7547557 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| ||||||||||| || || || ||||| |||||||| || |||| Sbjct 7547556 CAAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGG 7547497 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| || |||||| ||||| | ||| ||| || | ||||| || Sbjct 7547496 AATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 7547437 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||||||||| || || | ||| || || || |||||||| Sbjct 7547436 TTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 7547389 >seq27 Length=2268459 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAAT-CGTTTAATTGACGCTCATCGTC 43971 || ||||| | ||| || |||||||||||||||| || | || | |||| || || Sbjct 2182979 ACTAAATGCAATGTGGATTCCTTTTGAATATTATAATACGCTAAACT-TCGCTGATTTTC 2183037 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || ||| || | ||||| | ||| |||||||| | |||| | | || | || Sbjct 2183038 CAGTTGCTTCCAAGCAAAAAGCAAACGTTGCTGAGCTGGAGGAATATTTTGTAGCTCCTG 2183097 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| ||| || | |||| | || |||| |||||||| | || || || || Sbjct 2183098 AATTTTAGCTTTAACGCTTTCAACGCTTTCGGCCGATTCCACATCCAAAGTGATAGTATT 2183157 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| |||| |||||||| ||||||||||| Sbjct 2183158 CCCGATTAATGTCTTCACGAATATTTGCAT 2183187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354770461320348