Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq53 111 1e-19 seq1 105 6e-18 seq308 89.7 4e-13 >seq53 Length=1361919 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | | |||||||||||| | ||||||||| ||||||| |||||||| Sbjct 1240217 TTCCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCG 1240158 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| ||||| ||||||||||| ||| |||| | | ||| ||||| | Sbjct 1240157 AAAGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAG 1240098 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||||||| ||| || | | | || ||| ||||| Sbjct 1240097 GAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTA 1240038 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 1240037 CTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 109 bits (120), Expect = 5e-19 Identities = 182/262 (69%), Gaps = 1/262 (0%) Strand=Plus/Minus Query 19949 TTATTATAAAATTTAAATAT-ATTTTATCATTTTCCTCCTCGTAACCTCAACACCAAATG 20007 ||| | | |||| |||| || |||||| || ||||| || | | || || ||||| Sbjct 1241823 TTAGTTTTAAATATAAAAATGATTTTAGAATGCCCCTCCGCGAAGACGTAAGACTAAATG 1241764 Query 20008 TAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTT 20067 ||||| ||||||||||| || || |||||| || ||| |||||||||||||| Sbjct 1241763 GAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTGCGCCCGTCTTCCAATTGTTT 1241704 Query 20068 GCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTG 20127 ||| ||| | || | | |||||||||| | | ||||| || || |||||| Sbjct 1241703 GCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCTTCCTTATCTTGGATTTTTGC 1241644 Query 20128 TTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAA 20187 ||| ||| | | || ||| || || |||| ||||| |||||||| ||||| Sbjct 1241643 TTTAACCGTTTCGATAGTATCCGACGGCTCTACCTCCAAAGTAATAGTTTTGCCAGTCAA 1241584 Query 20188 CGTTTTGACAAAAATTTGCATT 20209 ||||| ||||| ||||||||| Sbjct 1241583 AGTTTTAACAAAGATTTGCATT 1241562 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || || | |||||| ||||| | || |||||||| |||||||||||||| Sbjct 1239987 CCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAG 1239928 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||||||||| || || | || | | ||| || || ||| Sbjct 1239927 AGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 1239868 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || || || ||| || | |||||| ||| ||| || Sbjct 1239867 ATACCTTCCTTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACC 1239808 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||||||||||||| ||||| ||||| |||||||||||||| Sbjct 1239807 TCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || | ||| |||||||||||||| |||||||| || || ||||||| Sbjct 1232552 ACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCTTCC 1232493 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||||||| ||| | || | | ||| |||||| || | ||||||||||| Sbjct 1232492 AGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCTTGG 1232433 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||| ||| || | ||| | ||| |||||| ||| | || || |||||| Sbjct 1232432 ATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCACTTCTAAAGTGATTGTTTTG 1232373 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAACTCT 20219 || ||||| || || || || ||||||||||||| | ||| Sbjct 1232372 CCAGTCAATGTCTTTACGAAGATTTGCATTTTTAGAATCT 1232333 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | | || ||||||||| | || |||||||| ||||| |||||||| Sbjct 1241563 TTCCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCG 1241504 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | ||||| ||||||||||| ||| | || | | ||| ||||| | Sbjct 1241503 AAAGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAG 1241444 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||||||| ||| || | | | || ||| ||||| Sbjct 1241443 GAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTA 1241384 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||||| |||||| ||||| ||||| ||||| ||||||||| Sbjct 1241383 CCTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCATT 1241334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | | |||||||||||| | || |||||||| ||||| ||||| || Sbjct 1240445 TTCCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCG 1240386 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | ||||||| |||||||| ||| | || | | ||| || || | Sbjct 1240385 AGAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 1240326 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||||||| || || | | | || ||| ||||| Sbjct 1240325 GAATACCTTCTTTATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTA 1240266 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| |||||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 1240265 CCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCATT 1240216 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || |||||||| || ||||| || ||||| ||||| |||||| | ||| |||| Sbjct 1234447 AAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCATCT 1234388 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||||||||| || || | || | | ||| || || ||| | ||||| || || Sbjct 1234387 TCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCC 1234328 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 || || ||| || | ||| | |||| ||| || ||||| || |||||| Sbjct 1234327 TGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATGGTT 1234268 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || |||||||| |||||||| || |||||||| Sbjct 1234267 TTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || |||||||| | |||||||| |||||||| |||||||| || || ||| Sbjct 1232783 AAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCT 1232724 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 || || ||||| || || | || | | ||||||||| || | ||||| || || Sbjct 1232723 TCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGGATTCCTTCCTTATCT 1232664 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||| || || || | ||| || |||| ||| || |||| ||| || ||| Sbjct 1232663 TGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATAGTT 1232604 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| || ||||||||||||||||| Sbjct 1232603 TTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 >seq1 Length=10097680 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| || | | |||||||| | ||| |||||||| ||||| |||||||| | Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| |||||||||||||||||| || | || | | || ||||| || Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||| |||||||| |||||| || || | ||| || ||| ||| || | Sbjct 7547495 ATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 7547436 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 |||| ||||| |||||||| || | ||||| || ||||||||||||||| Sbjct 7547435 TCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTT 7547385 >seq308 Length=190705 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| || | |||||| | ||||| || ||||||||||| || || ||||| | Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATC--CG 86679 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| | | || ||||||||||||||| || || | || | | ||||| ||| | Sbjct 86680 ATAATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTG 86739 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| ||| || |||||| | ||| || ||| || || Sbjct 86740 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGA 86799 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || | |||||||| ||||| || | ||||| |||||||| ||||| || Sbjct 86800 CCTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATATT 86851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419578757249931