Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005178.1 Length=37611 Score E Sequences producing significant alignments: (Bits) Value seq550 562 7e-156 >seq550 Length=29371 Score = 562 bits (622), Expect = 7e-156 Identities = 911/1302 (70%), Gaps = 28/1302 (2%) Strand=Plus/Minus Query 14032 CCCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCACCCTGGT 14091 |||| | ||| |||| || |||||||| ||||||||||| | |||||||| || ||||| Sbjct 17434 CCCGAAAGGCGAGCAGGACGCCATTGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGT 17375 Query 14092 GAGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCAT 14151 |||||| | || ||| | ||||| | | |||| |||||| || | ||| | | Sbjct 17374 CAGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCGCTGGTAGT 17315 Query 14152 CATGGATGCCTTCGAACAGGCCGCCACGATGTTGGAGGCGATCAAGGCGGAGCTGGAGTT 14211 |||||| || |||| |||||| | ||||| | || || |||||||| |||||||| || Sbjct 17314 GATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATT 17255 Query 14212 CAATCCGCGCCTGGCCATGGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTCTGGCAAGT 14271 || || || ||| ||||||||| | | | ||| |||||||||||||| | Sbjct 17254 TAACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGGGTAGGCCGCGTCTGGCAGAT 17195 Query 14272 CGGCACCATCGTTACGGCGAACGATGC-CAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGA 14330 ||||||||| | ||| |||||| |||||| ||||| ||| ||| || | Sbjct 17194 GGGCACCATCCTGACGCGCAACGATATGCAAGGTGCAGGTGGCCGGTAGCGGTAAAAAGC 17135 Query 14331 TGCGCGGCCTTCGACACGGCCCGCACCGTCCTGACCTGGTGGTCGGCGACGACCTGGAGA 14390 |||||||||| || ||||| ||| |||| |||||||||||| | ||||| | |||| Sbjct 17134 TGCGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGA 17075 Query 14391 ACGACGAGAACGTCCGCAGCCCGGAGCAGCGCGACAAGCTGGAAAACTGGCTGAAGAAGA 14450 |||||||| | || |||| |||||| ||||||||||| ||||||| |||||||| || | Sbjct 17074 ACGACGAGCAGGTGCGCAACCCGGACCAGCGCGACAAACTGGAAAGCTGGCTGAGAAAAA 17015 Query 14451 CCGTTCTGTCCCTCGGCTCGGCCGACGACACCATGGACGTGATCATCATCGGCACCATTC 14510 |||| ||| | || ||| || | || | | || ||| || ||||||||||| | Sbjct 17014 CCGTGCTGCCGCTGGGCGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCC 16955 Query 14511 TTCACTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCACTGTGGAAGCGGCGCAAGT 14570 | || |||||||||||| | || ||| ||||| |||||| ||||| | | ||| | Sbjct 16954 TGCATTACGACTCGGTCTTATCACGCACCCTGAATAACCCATTGTGGCGACAG-GCACGG 16896 Query 14571 -TCAAGGCGATCATTGAATGGCCGCACCGCATGGACCTGTGGGAGAAGTGGGAAGAGCTT 14629 | ||||| | | |||||| | || |||||||||| ||||| ||| Sbjct 16895 CTTAAGGCCCTGCGCCAGTGGCCGGTGAACCTGTCGCTGTGGGAGACCTGGGAGCAGCGC 16836 Query 14630 CTGCTCAACTCGGACGACGAAGGGGTCGCCGCGCTGGAGTTCTACCAGGAGCGCGCCGCC 14689 ||| ||| || || || ||| |||| || || ||| || | || Sbjct 16835 TTGCGTAACGAGGGGGAGGA------CGCGGCGCAGGCATTTTACACCCGGCACCGCGTG 16782 Query 14690 GCCATGGAGGACGGCGCGATCATCTGCTGGCCGGATGGGCAGCCCCTCTACAAGCTCATG 14749 | ||||| || |||||| ||| |||| | | | | || || | || ||| Sbjct 16781 GAAATGGAAGATGGCGCGGAGGTCTCCTGGTCCGCCCGCCCGCTGCTGACC---CTGATG 16725 Query 14750 GTGAAACGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAGCAGAACGACCCTGTC 14809 | || ||||| || || ||| | | || || | || | ||||| ||||| ||| Sbjct 16724 CATATCCGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGACCCGGTC 16665 Query 14810 CAAGGCGAAAACGCCCCCTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTGGC 14865 || ||| | || | || ||| |||||||| |||||||||||||| || Sbjct 16664 AGCGGTGAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTTAA 16609 Query 14866 GCAATGGATGTTCTACGGCGCGTGTGACCCGTCCCTTGGCAAGCAAGGCTCCAGCCGCGA 14925 | ||| | ||||| || || || ||||| ||| |||||| || ||||||| || Sbjct 16608 CGAGTGGGTCTTCTATGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGA 16549 Query 14926 CCC--CAGCGCCATCCTGGTGGGAGGGTTCAATCGGGAGACAGGCGTCCTGGACGTGGTC 14983 ||| |||||| | ||||| || || || ||||| | || ||||| ||||| ||||| Sbjct 16548 CCCGTCAGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTG 16491 Query 14984 GAGGCCGCCATCCGCAAGCGCCTGCCGGACAAGATCATCGAAGACATCATCGCCATGCAG 15043 || || || |||||||| ||||||||| || ||| | || || || |||| Sbjct 16490 GAAGCGCAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAA 16431 Query 15044 CGGGCCTATCACTGCCTGGTGTGGGGCGTTGAGGCGGTCCAGTTCCAGGAGTTCCTGCGC 15103 || |||||||||||||| |||||| |||||||||| ||||| ||||||||||||||| Sbjct 16430 AAGGAATATCACTGCCTGGTCTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGC 16371 Query 15104 ACCGAGCTGGTGAAGCGCTCGGCCAAGGCGGGCTGTCCAGTACCTGCCCGAGCGATCACA 15163 ||||||||| | |||||| |||| || |||| || || || || || || || | Sbjct 16370 ACCGAGCTGATTAAGCGCGCGGCTCAGCTGGGCCACCCGGTGCCGGCGCGGGCCATTATC 16311 Query 15164 CCACACGCCGACAAGCTACTGCGCATCGAAAGCCTCCAGCCGCACATGGCCAACGGCCTA 15223 || || ||||||||||| |||| ||||| | ||| ||||| || |||| ||||| || Sbjct 16310 CCCCATGCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTT 16251 Query 15224 ATCCGTCTGCATCCAAGCCAGACCGTTCTGGAGCAACAGCTGCGCCA--CTTCCCGGCCG 15281 ||||| ||||| | ||||||||| ||| || ||||||||||| |||||| || Sbjct 16250 ATCCGGCTGCACGCCAGCCAGACCACCCTGATACAGCAGCTGCGCCATTTTTCCCG--CG 16193 Query 15282 CAGACCACGACGATGGCCCCGACGCCCTGCACATGCTCTGGA 15323 | ||||| ||||| ||||| ||||| ||||| |||||||||| Sbjct 16192 CCGACCATGACGACGGCCCGGACGCGCTGCATATGCTCTGGA 16151 Score = 143 bits (158), Expect = 6e-30 Identities = 170/227 (75%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 17381 CCGGCTGGAAACGATCTACCAGACCAACATGCAGTCGGCCTACATGGCCGGGCGCTATGC 17440 ||||||||| ||||| | | ||||| | ||||| ||||| ||||||||||||||| | Sbjct 14245 CCGGCTGGAGACGATTTTTCGCACCAATACCCAGTCTGCCTATATGGCCGGGCGCTAT-C 14187 Query 17441 CGCCGCATACGAGGCCAGGGAAACCCAC--CCCTACTGGATGTATGTGGCGGTCATGGAC 17498 || || | || | | | ||| | ||||||||| |||||||||||| |||||| Sbjct 14186 AGCGGC-TGCGCGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 14128 Query 17499 AGCGTCACTCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTTCCGCTGGGACGACCCG 17558 ||| ||| || ||||||||||| ||||| |||||| ||||||||| | ||||| || Sbjct 14127 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 14068 Query 17559 ATCTGGCAGCACATCATGCCGCCGAATGGCTACAACTGCCGGTGCCG 17605 |||| | | | | || ||||| |||||||||||||| ||||| Sbjct 14067 GGCTGGGATACCCTGTTTCCCCCGAACGGCTACAACTGCCGCTGCCG 14021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120231242745126