Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq184 221 1e-52 >seq184 Length=525875 Score = 221 bits (244), Expect = 1e-52 Identities = 497/734 (68%), Gaps = 17/734 (2%) Strand=Plus/Minus Query 12960 TACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAAT 13019 |||| || ||||||| || ||| | || || ||| | |||||||| || ||| | Sbjct 28990 TACATCC-AATTCTAATAGCAAACGATCCGCTACATATTCTATGTATTGACACATACTTT 28932 Query 13020 CACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATAT 13079 || ||||| || ||||| || || || | ||||||||| | ||| | ||||| || | Sbjct 28931 CATTATTCATACCGATTAAATTGACTGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTT 28872 Query 13080 CAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTG-AT-AGATG 13137 ||| || ||| | | ||| || ||| |||||| | | | | |||| || | || Sbjct 28871 TAACGGCATCGGTTATTATTTCCAATATG-CGTTCTTTGGTCG-GTTTTTGTATCAAATA 28814 Query 13138 CTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197 |||||||| | | ||||| || || || || |||||||| | ||||| || || Sbjct 28813 TTTAAACATTAAAACCGCAAATTCGCAATGTAAACCTTCATCGCGTGATATTAATTCATT 28754 Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGA 13257 |||||||||||||||||||| | || ||||| |||| ||||||||| | |||||| Sbjct 28753 AGAAAATGTTAGACCCGGCATTATTCCACGTTTCTTAAGCCAAAATATCGAAGCAAAACT 28694 Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317 || ||| ||||| ||||| || || ||||| ||||| | | |||||| | | | Sbjct 28693 TCCACTAAAGAATATACCTTCGACGGCAGCAAAAGCTATGACACGCTCACCAAA---ATT 28637 Query 13318 ATTTTTACTC---TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 || | |||||| | ||||| | ||||| | |||||| | ||| Sbjct 28636 CGCCGAACGCGATGATATCCAAGCTAAAGCCCATTCCGCTTTCTTTTTAACTAACGGCAT 28577 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 | || || || ||||| | ||||| ||| || ||| ||| | || || || Sbjct 28576 CGTCTCAATGGCATTAAAAAGATAATCGCGTTCTTTCGGATCTGCGATAAATGTTTCAAT 28517 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 | ||| ||||||||||| || || | |||||| || |||||||| ||||||||||| || Sbjct 28516 AAGTAAACTATACATTTCCGAGTGTACATTTTCGATGGCTATTTGAAAACCATAAAAGCA 28457 Query 13495 TCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTA 13553 | ||| || | ||| |||||||| ||| |||| | ||| |||| || || ||||| | Sbjct 28456 ACGAGCTTCGGTTACTTGAACTTCTTGAG-AAAAACGTTCCACTAAATTCTCATTAACAA 28398 Query 13554 TCCCGTCACTAGCAGCaaaaaaaGC--AAGTATGTGCTTAATAAAttttttttCGTTTTC 13611 | |||||| || ||||||||||| || ||||| |||||| | ||| | || Sbjct 28397 TGCCGTCAGATGCCGCAAAAAAAGCCAAAACATGTG--AAATAAAATGACGTTCATCATC 28340 Query 13612 TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 | || ||||| || |||| | | ||| ||||| || | |||||||| Sbjct 28339 AGTTAATCGCTCCCAATGATCAAGATCTGCAGCGAGATCAACCTCTTCCGCCGTCCAAAA 28280 Query 13672 AGAAGCAACAGCCT 13685 |||||| |||||| Sbjct 28279 AGAAGCTTCAGCCT 28266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430973727960702