Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq552 138 4e-28 seq735 98.7 3e-16 >seq552 Length=31981 Score = 138 bits (152), Expect = 4e-28 Identities = 203/283 (72%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 22461 GAAACCCTCACCGACATCCAGCGTGCGGCACGCTTCTACTACCTGCAAAAA-AGTTGCTT 22519 || ||| | ||||| |||||||| ||||| || ||||| |||||||||||| || | || Sbjct 9766 GAGACCTTAACCGATATCCAGCGCGCGGCCCGTTTCTATTACCTGCAAAAACAGGCG-TT 9708 Query 22520 TGGCGGGAAGCTTGAAGGGCAGACGTTCGGAACGGCGACGACTACGGTGCCGGGCCTGAA 22579 ||||| ||| | | | ||| || || || | |||| || || | ||| ||||||| Sbjct 9707 CGGCGGCAAGGTGGCGGAGCACACCTTTGGCGTGACGACCACCACTGCGCCACGCCTGAA 9648 Query 22580 CCTGCTGCGCATCGAAGAAGAGCTATCGGCGGCGCACATTCG--TCTCGCGAATGCGTAC 22637 |||| ||||||| |||||||| || ||| ||| || | || | || || | | | Sbjct 9647 CCTGTTGCGCATGGAAGAAGAACTGTCGTTGGCTCATCTGCGATTATCACGCA--CCACC 9590 Query 22638 ATCGAGCGGCTCGATTGGGCGACCTGCATCGATCGTTACGATCGGCCGCACACGCTGTTC 22697 || || | || |||||||| | ||| || | ||| || || || ||||| ||||||||| Sbjct 9589 ATTGAACAACTTGATTGGGCCAGCTGTATTGCTCGCTATGACCGTCCGCATACGCTGTTC 9530 Query 22698 TACCTTGATCCGCCGTACTTCGAGACTGAAGGGTACGGCGTCG 22740 ||| ||||| ||||| | | || || || || ||||||| Sbjct 9529 TACTGCGATCCCCCGTATTGGGGCACCGAGGGCTATGGCGTCG 9487 >seq735 Length=2270 Score = 98.7 bits (108), Expect = 3e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 22320 GTCGAGGTGATCAACGATATCAACGGCGAGCTGGTGAACCTGTATCGCGTCGTTCAGCAC 22379 || |||||| | || ||||| || || ||| || | || ||||||||||| || ||||| Sbjct 958 GTTGAGGTGCTTAATGATATTAATGGGGAGTTGATAAATCTGTATCGCGTGGTAAAGCAC 899 Query 22380 CATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCTGACGAGCCGGCAGGTGTTCGAG 22439 ||| | |||||||| || || ||||| |||||||| | || || | || | || ||| Sbjct 898 CATATGGAAGAGTTTGTCCGACAGTTTAAATGGGCATTAACCAGTAGAAAGCTATTTGAG 839 Query 22440 TGGCTGAAGCATACGGTCCCGGAAACCCTCACCGACATCCAGCGTGCGGCACGCTTCTAC 22499 |||| | | | | || |||| ||||| || || || ||||| || || || || Sbjct 838 TGGCAACAAAAGATGCCACCAGAAATTCTCACTGATATTCAACGTGCTGCGCGATTTTAT 779 Query 22500 TACCTGCAA 22508 || |||||| Sbjct 778 TATCTGCAA 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175442960263674