Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq308 183 7e-41 seq53 174 4e-38 seq1 154 3e-32 seq184 152 1e-31 seq146 122 2e-22 seq260 95.1 3e-14 seq141 89.7 1e-12 seq27 86.0 1e-11 >seq308 Length=190705 Score = 183 bits (202), Expect = 7e-41 Identities = 169/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || |||||||| || |||||||| ||||||||||| || |||| || | ||| ||||| Sbjct 86640 ACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGATAATGTGCGACCATCTTCC 86699 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | |||||||||||| || || | | ||||| || || || ||||| ||||| |||||| Sbjct 86700 AATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 86759 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| |||||||| | ||||| || || ||||| || ||||| ||||| Sbjct 86760 ATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGACCTCAAGAGTAATGGTCTTG 86819 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || ||||| ||||||||||| |||||||| |||| Sbjct 86820 CCCGTAAGGGTTTTTACAAAAATCTGCATATTGT 86853 >seq53 Length=1361919 Score = 174 bits (192), Expect = 4e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || | ||| || || ||||||||||| ||||| || || Sbjct 1241564 ATTCCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCC 1241505 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||||||||| |||||| |||||||| || | | ||| ||||| ||| Sbjct 1241504 GAAAGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGA 1241445 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| ||||| |||||||| || ||||| | ||||| |||||| Sbjct 1241444 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCT 1241385 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| | ||||| | || ||||| | ||||||||||| || |||||| Sbjct 1241384 ACCTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCATT 1241334 Score = 167 bits (184), Expect = 5e-36 Identities = 160/205 (78%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || || ||||||||||| ||||| ||||| || ||||| | ||||||||| || || Sbjct 1240420 ATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACCGTCTTCCAGCTG 1240361 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| |||||||| || | | ||| || || ||||| || ||||||||||| ||||| || Sbjct 1240360 TTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTATCTTGAATTTT 1240301 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||| || || ||||| | ||||| ||||||||||| | ||||| || || ||||| Sbjct 1240300 TGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAATGGTTTTGCCAGT 1240241 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 | ||||| |||||||| |||||| Sbjct 1240240 CAAAGTTTTAACAAATATTTGCATT 1240216 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| ||||||||||| || || | ||| || || || ||||| | |||||||||| ||| Sbjct 1240192 ATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCCGTCTTCTAATTG 1240133 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| ||||||||||| | | ||| ||||| ||||| || ||||||||||| ||||| || Sbjct 1240132 TTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTT 1240073 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||||| || ||||| | ||||| |||||||| || | ||||| || || ||||| Sbjct 1240072 TGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAATGGTTTTTCCAGT 1240013 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | ||||| ||||| |||||||| Sbjct 1240012 CAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||| |||||||| || ||||| || ||||| | || | || ||||| |||||| Sbjct 1232546 TGCAATGTTGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCTTCCAGTTGT 1232487 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | | ||| ||||| ||||| || |||||||| || || |||||| Sbjct 1232486 TTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCTTGGATCTTT 1232427 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||||||||||||| | ||||| ||||| || |||| || || || || ||||| Sbjct 1232426 GCTTTTACATTTTCAATTGTATCAGATGGTTCCACTTCTAAAGTGATTGTTTTGCCAGTC 1232367 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 | ||| ||||| || || |||||||| Sbjct 1232366 AATGTCTTTACGAAGATTTGCATTTT 1232341 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || |||||||| || || ||||| || ||||| | || | ||||||||||| || Sbjct 1239736 ATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCTAGCTG 1239677 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| ||||| || |||| | |||||||| || || |||||||| ||||| |||||||| Sbjct 1239676 TTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTT 1239617 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| ||||| || | |||||| ||| || ||||| | || | ||| || ||||| Sbjct 1239616 AGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGACAGTTTTCCCAGT 1239557 Query 104536 AAGTGTTTTTACAAATATCTGCATTTT 104562 | ||| || || || ||||||||||| Sbjct 1239556 CAATGTCTTCACGAAGATCTGCATTTT 1239530 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| || || ||||||||||| || || || || || ||||| | ||| ||||| Sbjct 1239969 ACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGACCATCTTCC 1239910 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | |||||| ||||| || || | | ||| || || || || || ||||| ||||| || Sbjct 1239909 AATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 1239850 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| || ||||| || || ||| ||| |||||||| | ||||| || || Sbjct 1239849 ATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTAATGGTTTTG 1239790 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||| ||||| || ||||| Sbjct 1239789 CCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 >seq1 Length=10097680 Score = 154 bits (170), Expect = 3e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 104328 TTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387 |||| || |||| | | |||||| | ||| ||||| ||||||||||| ||||| || | Sbjct 7547620 TTATACCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAAT 7547561 Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| | ||| | || ||||| | |||||| ||||| || || | | || ||||| | Sbjct 7547560 CAGACAAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTG 7547501 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 |||| || || ||||| |||||||| || || || |||||||| | || ||| ||| | Sbjct 7547500 GAGGAATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCT 7547441 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 | || || | ||||| || || |||||||| ||||| || || || |||||||| Sbjct 7547440 CAACTTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 7547386 >seq184 Length=525875 Score = 152 bits (168), Expect = 1e-31 Identities = 444/675 (66%), Gaps = 24/675 (4%) Strand=Plus/Plus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGA-CTTAATAGAT 268810 |||| | |||||||||||||| | ||||| || ||||| || || ||| || || Sbjct 28266 AGGCTGAAGCTTCTTTTTGGACGGCGGAAGAGGTTGATCTCGCTGCAGATCTTGATC-AT 28324 Query 268811 TGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870 ||| | |||| || ||| | ||||| || || || | || |||||||| Sbjct 28325 TGGGAGCGATTAACTGATGATGAACGTCATTTTATTTCACATGTTTTGGCTTTTTTTGCG 28384 Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATT 268930 | ||| || || ||||| || ||| |||| || || | |||||| || || | Sbjct 28385 GCATCTGACGGCATTGTTAATGAGAATTTAGTGGAACGTTTTTCTCAAGAAGTTCAAGTA 28444 Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATG 268990 | ||||| | || ||||| || || || ||||| || |||||| | || || || ||| Sbjct 28445 ACCGAAGCTCGTTGCTTTTATGGTTTTCAAATAGCCATCGAAAATGTACACTCGGAAATG 28504 Query 268991 TACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCT 269050 || ||| || | || || || | ||| | ||| ||||| | || ||| || | Sbjct 28505 TATAGTTTACTTATTGAAACATTTATCGCAGATC----CGAAAGAACGCGATTATCTTTT 28560 Query 269051 T-----CTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGA 269105 | | ||||| | ||| | || | ||| ||| | ||||||||| | |||| Sbjct 28561 TAATGCCATTGAGA-CGATGCCGTTAGTTAAAAAGAAAGCGGAATGGGCTTTAGCTTGGA 28619 Query 269106 TA--AACGATAGCG-CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTA 269162 || | || || || || || || | | | |||||||| || || ||||||| Sbjct 28620 TATCATCGCGTTCGGCGAATTTTGGTGAGCGTGTCATAGCTTTTGCTGCCGTCGAAGGTA 28679 Query 269163 TATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAG 269222 |||||||| || |||||| | || |||||| | |||||| | || | ||||| | Sbjct 28680 TATTCTTTAGTGGAAGTTTTGCTTCGATATTTTGGCTTAAGAAACGTGGAATAATGCCGG 28739 Query 269223 GATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTT 269282 | |||| || ||||| ||||| ||| | || ||||||||||| ||||| || || Sbjct 28740 GTCTAACATTTTCTAATGAATTAATATCACGCGATGAAGGTTTACATTGCGAATTTGCGG 28799 Query 269283 GTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTA 269342 |||| | || ||| ||| | ||| ||||| | |||| | ||| ||||| | Sbjct 28800 TTTTAATGTT---TAAATATTTGATACAAAAACCGACCAAAGAACGCATATTGGAAATAA 28856 Query 269343 TA---GATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATC 269399 || ||| || ||| | |||| |||||||| || ||||||||| | || || Sbjct 28857 TAACCGAT---GCCGTTAAAATTGAAAAGGAATTTCTGACAGAAGCTCTACCAGTCAATT 28913 Query 269400 TTATCGGTATGAATA 269414 | ||||||||||||| Sbjct 28914 TAATCGGTATGAATA 28928 >seq146 Length=585010 Score = 122 bits (134), Expect = 2e-22 Identities = 154/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 238564 TCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGAC 238623 |||||| |||| ||| ||||| | |||||||| || ||| ||||| || ||||| Sbjct 532096 TCGAGAAGGCCGTTACTTACGATGATTTGTGGAATTCAGCTCAGTTACAATTGATAAGAG 532037 Query 238624 TAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTA 238683 || |||||||| |||| || || ||||||||||| |||||||| || |||||| ||| Sbjct 532036 AGGGTAAAATGCACGGTTTTTTGCGCATGTATTGGGCGAAAAAGATTCTGGAATGGTCTA 531977 Query 238684 GATCTCCAAAGGAAGCTCTTAGATAT---AGTATTTATCTGAACGATAAATACGAACTCG 238740 | |||| | || ||| ||||| || | |||| | | || ||||| ||| | | Sbjct 531976 AAACTCCTGAAGACGCT-TTAGAAATTTCACTATT--TTTAAATGATAAGTACAGTTTGG 531920 Query 238741 ACGGTACGGATCCTAACGGATACGTAGGT 238769 | || |||||||||||||| ||||| ||| Sbjct 531919 ATGGAACGGATCCTAACGGTTACGTGGGT 531891 >seq260 Length=279278 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/182 (70%), Gaps = 20/182 (11%) Strand=Plus/Minus Query 104378 ATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTC 104437 ||||| ||||| || ||||| | |||||||| | |||||| |||||||| Sbjct 75363 ATATTGTAGTCCGAGAGAGTACGACCGTCTTGAAATTGTTTGCCAGCAAA---------- 75314 Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 |||| | | ||||||||| |||||||||||||| | |||||| | ||| Sbjct 75313 ----------GAGGAAGACTTTCTTTATCTTGAATCTTTGCTTTAAAATTTTCGATAGTA 75264 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || ||||||||||| | ||||| || || ||||| | ||||| ||||| || ||| Sbjct 75263 TCTGATGGTTCTACCTCCAACGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATTTGC 75204 Query 104558 AT 104559 || Sbjct 75203 AT 75202 >seq141 Length=594277 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 104344 CCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACC 104403 || ||||| ||||||||||| |||||||| ||| |||| | | || | || | Sbjct 352009 CCAAAGTA--AGATGTAATGTGGATTCTTTTTGAC-ATTACAATTCGACAATGTGCGGTG 352065 Query 104404 GTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTT 104463 ||| |||| |||||||| | | | | || ||||| || || ||||| ||||| Sbjct 352066 ATCTCCTAGATGTTTTCCTGTTGTTTTCAATCAATGCTGATCTGGTGGAATTCCCTCTTT 352125 Query 104464 ATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAAT 104523 ||||| | ||| ||||||||||||| || ||||| || || || || || || || Sbjct 352126 GTCCTGCAACTTGACTTTTACATTTTCGACAGTATCAGAGGGCTCCACGTCAAGAGTGAT 352185 Query 104524 AGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||| | ||||| |||||| ||| || |||| ||| Sbjct 352186 AGCCTTGGCCGTAAGAGTTTTTGTAAAAATGCGCATATTG 352225 >seq27 Length=2268459 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| ||||| ||||| || ||||||||||| | | || | ||| | ||| Sbjct 2182979 ACTAAATGCAATGTGGATTCCTTTTGAATATTATAATACGCTAAACTTCGCTGATTTTCC 2183038 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || | |||||||| | | || ||| | ||||| || || | |||||| Sbjct 2183039 AGTTGCTTCCAAGCAAAAAGCAAACGTTGCTGAGCTGGAGGAATATTTTGTAGCTCCTGA 2183098 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || ||||| || |||| ||| | ||| | ||| || || | || ||||| || Sbjct 2183099 ATTTTAGCTTTAACGCTTTCAACGCTTTCGGCCGATTCCACATCCAAAGTGATAGTATTC 2183158 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || | | ||| || || ||||| |||||||| Sbjct 2183159 CCGATTAATGTCTTCACGAATATTTGCATTTT 2183190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151374043965908