Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq813 264 3e-66 >seq813 Length=1717 Score = 264 bits (292), Expect = 3e-66 Identities = 335/456 (73%), Gaps = 5/456 (1%) Strand=Plus/Plus Query 40400 GTCCACGATGTCAAGCTACAGGCCCTTGAATCCATCGTCGCCGAGGCGGCCGGTATGCCG 40459 || || ||||| |||||| | || || ||| ||| || |||| | | ||||| || Sbjct 34 GTACATGATGTAAAGCTAAAAGCGCTGGAAAGTATCATCAGCGAGTCCGGCGGTACACCT 93 Query 40460 GTGCTGGTG-GCGTACCACTTCAAGTCCGACCTCGCGCGCCTACAGCGTGCCTTCCCCCA 40518 |||||||| || || |||| ||| |||||| | ||| || | ||||| || | Sbjct 94 GTGCTGGTACGCCTATCACTGGAAGCACGACCTTGAGCGTCTGCTTAACGCCTTTTCCGA 153 Query 40519 GGGCCGCGCGCTCGACCAGAACCCGCAGACGATCCGCGACTGGAACGCAGGAAAAATCCC 40578 | || || ||| || |||||||| ||| ||||||||||||| ||| || || Sbjct 154 TGTCCTTCATCTGGACGCCAATCCGCAGACCATCAGCGACTGGAACGCCGGACGGATACC 213 Query 40579 GCTGCTGTTCGCCCACCCGGCCAGCGCCGGCCACGGGCTGAACCTGCAAGACGGCGGCAA 40638 ||| |||||||| ||||| ||||||||||| |||||||||||||| || |||||||| || Sbjct 214 GCTACTGTTCGCGCACCCTGCCAGCGCCGGGCACGGGCTGAACCTTCAGGACGGCGGTAA 273 Query 40639 CATCCTGGCTTTCTTCGGCCACTGGTGGG-ACTTGGAACAGTACCAGCAAATCATCGAAC 40697 | ||| || ||| ||||| |||| ||||| | ||||||||||| || ||||| | Sbjct 274 --TGGTGGTGTTTTTCTCGCACTGATGGGGACTTG-AGCAGTACCAGCAGATTATCGAGC 330 Query 40698 GTATCGGCCCGACGCGCCAGGCGCAGGCCGGCCATGACCGCCCGGTGTTCATCTACCACA 40757 | ||| |||| || || ||||| ||||| || || |||||||| |||||| |||||| Sbjct 331 GCATCAGCCCTACCCGGCAGGCACAGGCAGGGCACCCGCGCCCGGTATTCATCCACCACA 390 Query 40758 TTGTCGCCACCGACACGATGGACGAATTGGTCATGGCTCGCCGCGAGTCCAAGCGCGAGG 40817 ||||||| ||||| || | || ||| ||||||||| || ||||| || ||||| ||| Sbjct 391 TTGTCGCTACCGATACCGTCGATGAACTGGTCATGGAGCGACGCGACTCAAAGCGTCAGG 450 Query 40818 TGCAAGACCTGCTACTGGAAGCCATGAAAAGGAGAA 40853 |||| ||| | || | || || ||||| ||| || Sbjct 451 TGCAGGACATTTTATTAGAGGCGATGAAGCGGAAAA 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135853336458210