Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq53 96.9 3e-15 >seq53 Length=1361919 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || ||||| | ||| || ||||| | || |||||||| || |||||||||| Sbjct 1232799 ACCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGA 1232740 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| ||| |||| || | ||| ||||| || | ||||||||||| ||||| || Sbjct 1232739 CAATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGG 1232680 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| || ||| || ||| | | | | || ||||||| || ||| Sbjct 1232679 GATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAAC 1232620 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || ||||| || || | || || |||||||| ||||| Sbjct 1232619 CTCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 48496 AAAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATC 48555 || ||| || |||| | ||| || ||||| || || ||||||||||||||| ||||| Sbjct 1234466 AATACCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATC 1234407 Query 48556 AGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCAC 48615 | | || | || |||| || ||||| || | || ||||||||||| || Sbjct 1234406 GGAGAGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGG 1234347 Query 48616 CGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCT----ATGGTATCGGTAG 48671 || | || |||||| ||| || || |||| |||| | |||||||||| || Sbjct 1234346 GGGAATACCTTCCTTATCCTGGATCTTA-GCTTT---GACGTTTTCAATGGTATCGGAAG 1234291 Query 48672 ACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || | || |||||||||||||| | |||||| || || || ||||| Sbjct 1234290 GCTCGACTTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421242723767651