Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq556 354 2e-93 >seq556 Length=23517 Score = 354 bits (392), Expect = 2e-93 Identities = 734/1083 (68%), Gaps = 12/1083 (1%) Strand=Plus/Minus Query 32158 TATCGCTATGATGGCGCGGTTAAAACCGTCTCAAACTGGCCTGCAGACAGCGGATTCACG 32217 || || || |||||| |||| ||||| | ||||||||| ||||| || |||| Sbjct 8188 TACCGTTACGATGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACG 8129 Query 32218 CAGTATGAGTTAGGCTCAGTCCGTGACATTACTCGCTTACGTGGGCGTTATGCATGGTCA 32277 || || || | || | || || || || | || || || ||||||| |||| Sbjct 8128 CAATACGATATTGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGT 8069 Query 32278 AAAGACGGTACAGATTCATGGTT--TATCACTGACCTTGAAGATGAATCGCATCCTGACC 32335 |||||||| || ||| || || | |||| || | ||||||||||| || ||||||| Sbjct 8068 AAAGACGGCACCGAT--ATTTTTGGTGTCACCGATTTGGAAGATGAATCTCACCCTGACC 8011 Query 32336 GCTACAGTGCAGAATATCGCGCAGAATCGCAGCCTGACGGGATAATTGGCATAGGTTCAT 32395 ||||| | || |||||||| ||||| || || ||||| || || || || | | | Sbjct 8010 GCTACCGCGCGCTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCT 7951 Query 32396 GGCGAGATTTCATCGTCTGCTTTGGCTCGTCGACGATAGAGTATTTCTCCCTGACAGGCG 32455 |||| ||||| || |||||||||||| |||| || || || ||||| |||||||| || | Sbjct 7950 GGCGCGATTTTATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGG 7891 Query 32456 CAACCACCGTTGGC--GCTGCGTTGTATGTCGCGCAGCCATCGTTAATGGTACAGAAGGG 32513 | || || ||| | || | |||| ||| ||||| | | ||||| |||| || Sbjct 7890 CGGCCGACG--GGCAATCCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGG 7833 Query 32514 GATTGCCGGAACATACTGTAAAACGCCATTCGCTGATTCATATGCATTCATCAGTCACCC 32573 |||||||| || |||| || || | ||| ||| | ||| ||||||| || | Sbjct 7832 CATTGCCGGGACCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGATCATCAGCCATCA 7773 Query 32574 GGCTACTGGCGCACCTTCCGTCTACATCATCGGGTCAGG-GCAGGCTTCACCAATTGCGA 32632 ||| || ||||| || || || ||| | || ||||| |||||| || | ||||| | Sbjct 7772 GGCCACCGGCGCGCCGTCGGTATACCTGAT-TAATCAGGCGCAGGCGACATCGATTGCCA 7714 Query 32633 CGGCCAGTATTGAGAAGATTATCCGCTCATACACAGCTGAAGAACTGGCGACTGGTGTAA 32692 |||||| || ||||| ||| | ||| |||||| || |||||||||| | || | Sbjct 7713 CGGCCACCATCGAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCA 7654 Query 32693 TGGAGACTTTGCGCTTCGATTCTCATGAGCTTCTGATTATTCATCTCCCTCGTCATGTTC 32752 |||| || | || ||||| || || | || |||| ||| | || || || || Sbjct 7653 TGGAAACCGTCCGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACAGGTGT 7594 Query 32753 TGGTTTACGACGCATCGTCAAGTCAGAACGGACCGCAATGGTGTGTGCTGAAAACAGGGC 32812 || ||| ||||| || | | |||||||| ||||||||| | |||||||||| || Sbjct 7593 TGTGTTATGACGCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCT 7534 Query 32813 TTTACGATGATGTATATCGTGCTGTCGACTTCATGTATGAAGGCAACCAGATAACGTGCG 32872 |||| | | | ||||| | |||| || |||| || | | | || | || || | Sbjct 7533 TTTATCACGCTCCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTG 7474 Query 32873 GCGATAAATCAGAAGCGTTGACAGGACAATTGCAATTCGACATCAGCAGC-CAATACGGA 32931 |||||||| || || | || ||| | | || | |||| | || ||||| | | Sbjct 7473 GCGATAAACACGATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAA 7415 Query 32932 CTACAGCAAGAACACCTGTTGTTTACCCCCCTCTTCAAAGCGGACAATGCCAGATGCTTC 32991 || ||| || || | | | |||||| || ||||| || || |||||| | || Sbjct 7414 AAACCGCAGGAGCATGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTT 7355 Query 32992 GACCTCGAAGTTGAATCATCCACTGGTGTTGCTCAATATGCTGACCGCCTGTTTCTGTCT 33051 || | ||| | || |||| || || || || || || |||||||| || || || Sbjct 7354 GATTTTGAACTGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCC 7295 Query 33052 GCAACCACGGACGGAATCAATTACGGTCGCGAACAGATGATTGAACAAAATGAGCCGTTT 33111 || ||| | ||||| || ||| || ||||||||||||||| | ||||||| ||||||| Sbjct 7294 GCCACCGCCGACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTT 7235 Query 33112 GTGTACGACAAGCGTGTTATCTGGAAACGTGTTGGGCGCATTCGTCGATTAATCGGATTC 33171 | ||| ||| |||| || ||||| || ||||| ||| | | |||| || Sbjct 7234 GCGTATGACCAGCGAATTCTCTGGCGGCGGGTTGGCTACATCAGAAAAAATGTCGGCTTT 7175 Query 33172 AAACTGCGGGTAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAG 33231 ||| | ||||| |||||| ||| || || || || ||||| ||||| || | |||| Sbjct 7174 AAAGTACGGGTGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGATGGAA 7115 Query 33232 TAA 33234 ||| Sbjct 7114 TAA 7112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132327005595486