Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq552 383 4e-102 seq793 176 1e-39 seq550 105 2e-18 >seq552 Length=31981 Score = 383 bits (424), Expect = 4e-102 Identities = 641/922 (70%), Gaps = 10/922 (1%) Strand=Plus/Plus Query 23028 AGGTCACGGCCGCGGACATCATCGGCGCCGTGAACG---CAGCCGGAATGCGCACGGGGA 23084 |||| || ||||| || || || | ||||| | || | |||||| || | || | Sbjct 18507 AGGTGACCGCCGCCGATAT--TCTGGGCCGT-ATCGATACCGCCGGACGACGGAGCGGCA 18563 Query 23085 TGAAGGCGCTGAAGGACACGTACAACCTGTACGGCTACTTCTCGAAGATTCTGATCGCGC 23144 | |||| ||| | || | || || ||| ||||| | | || |||||||| || | Sbjct 18564 TCAAGGTACTGGATGATGCTTATAATCTGCTGGGCTATGACGCCAAAATTCTGATTGCAC 18623 Query 23145 CGGCGTACTGCACGCAGAACTCGGTCTCGGTCGAGCTGGAGGCGATGGCCGTCCNNNNNN 23204 ||| || || || |||| ||||||| ||| ||||||| ||| |||| | Sbjct 18624 CGGTCTATTGTACCCAGACCTCGGTCACGGCGGAGCTGGCGGCCTATGCCGACAAGCTCA 18683 Query 23205 NNNNNATCGCGTACATCGATGCGCCGATCGGCACGACGCTCGCGCAGGCGCTGGCCGGGC 23264 ||||| || | ||||||||||| ||||| || | |||||||| | ||||| | Sbjct 18684 AGGCCATCGCCTATGTGGATGCGCCGATTGGCACCACCTTTGCGCAGGCTATCGCCGGTC 18743 Query 23265 GCGGGCCGGCGGGCACGATCAACTTCAACACGTCCAGCGACCGCGTACGCCTCTGCTACC 23324 ||||| ||||||| || |||||||||||||| || ||| || || ||||| ||||| | Sbjct 18744 GCGGGTCGGCGGGTACCATCAACTTCAACACCGCCTCCGAGCGAGTGCGCCTGTGCTATC 18803 Query 23325 CGCACGTGAAGGTCTACGACACCGCGACCAACGCGGAACGCCTGGAGCCGCTCTCATCGC 23384 |||| | ||| || |||| || | |||| | ||||||||||||||||| || Sbjct 18804 CGCATGCCCTGGTGTATGACAAGGCCAGCAACAAAAATCGCCTGGAGCCGCTCTCGCAGC 18863 Query 23385 GTGCGGCGGGCCTTCGCGCACGTGTCGACCTGGACAAGGGCTACTGGTGGTCCAGCTCGA 23444 | |||||||| | || || |||||| |||| || || | ||||||||| ||| | Sbjct 18864 GCGCGGCGGGATTGCGGGCGAAAGTCGACTTGGAAAAAGGGTTCTGGTGGTCGTCCTCCA 18923 Query 23445 ATCAGCAGCTCGTCGGCGTCACGGGCGTCGAGCGGCCGCTGTCGGCGATGATCGACGATC 23504 ||||| || | | |||| | ||| | |||||||| ||||| |||| | ||| ||| Sbjct 18924 ATCAGGAGATTGCCGGCATTGTCGGCATGGAGCGGCCACTGTCAGCGAAGCTCGGGGATG 18983 Query 23505 CGCAATCGGACGTGAACATGCTCAACGAACAGGGCATCACGACCGTGTTCAGCTCGTACG 23564 | ||| || || ||| ||| || ||| | |||||||| || || || | | | | Sbjct 18984 CCCAAAGTGAAGTTAACCAGCTTAATGAAAACGGCATCACCACGGTATTTAACGGTTTTG 19043 Query 23565 GCTCGGGCCTGCGCCTGTGGGGCAACCGCACGGCGGCATGGCCGACCGTGACGCACATGC 23624 | | || |||||||| |||||||||||| ||||||| | |||||||| || || || Sbjct 19044 GTACCGGTCTGCGCCTATGGGGCAACCGCTCGGCGGCGTTTCCGACCGTCACCCATGTGA 19103 Query 23625 GCAACTTCGAGAACGTGCGCCGTACGGGCGACGTCATCAACGAATCGCTGCGCTACTTCA 23684 ||||| || |||||||| || |||||||| | || |||| ||||||| | |||| Sbjct 19104 AGAACTTTGAAAACGTGCGGCGCACGGGCGATATGCTCGACGAGGCGCTGCGTTTTTTCA 19163 Query 23685 GCCAGCAGTTCGTCGACGCGCCGATCGACCAAGGGCTGATCGACTCGCTCGTCGAGTCGG 23744 ||| ||| | | ||| || ||| | || | |||| || | || |||||||| Sbjct 19164 GCCTGCAATATCTGGACAGACCCATCAATCAGGCATTGATTGATGCCCTGTGCGAGTCGG 19223 Query 23745 TGAACGGGTTCGGGCGCAAGCTGATCGGCGACGGCGCGCTGCTCGGC-TTCAAGGCATGG 23803 | || | | ||||||||||||||| ||||| || |||||||| ||| ||| || ||| Sbjct 19224 TCAATGCCTACGGGCGCAAGCTGATAGGCGATGGTGCGCTGCTTGGCTTTCGCTGC-TGG 19282 Query 23804 TTCGATCCGGCCCGCAACCCGAAAGAGGAGCTGGCGGCCGGCCACCTGCTCATCAACTAC 23863 | || ||| || ||| || |||| |||||| | ||||| || ||||| | || ||| Sbjct 19283 TATGACAAGGCGCGTAACACGCAAGAAGAGCTGTCTGCCGGACATCTGCTGCTGAATTAC 19342 Query 23864 AAGTACACGGTGCCGCCACCGCTCGAACGCCTGACGTACGAGACCGAGATCACCTCGGAG 23923 || || ||| || ||| | || |||||||| || || ||||| || ||| | ||| Sbjct 19343 GCCTATACCCCGCCCCCGCCGATGGAGCGCCTGACCTATGAAACCGAAATTACCGCCGAG 19402 Query 23924 -TACTTGCTCACCCTGAAGGGA 23944 | || ||| | |||||| ||| Sbjct 19403 TTTCTGGCT-AACCTGAAAGGA 19423 Score = 217 bits (240), Expect = 3e-52 Identities = 462/679 (68%), Gaps = 23/679 (3%) Strand=Plus/Plus Query 3710 TCGAGCGGGGCCAGCTCGACCATTTCGCATCGCTGCACGACTTCCCGGACGTCCTGGTTG 3769 || ||||| | ||| || | || || || ||||| || ||||||| ||| | | | Sbjct 3801 TCCAGCGGTGGCAGGTCAATCACCTCACAGCGCTGTACCACTTCCCTGACCGCTAGCAGG 3860 Query 3770 CGCTCGGACAGCTTGACCTTCAGCTCCGGCTGGCCGATCAGGATGATGGACAGCAGCTTC 3829 |||||||| | |||| | ||| || || || || | ||||| |||||||||||| || Sbjct 3861 CGCTCGGATAACTTGTCGCCCAGTTCGGGTTGTCCCAGCAGGACGATGGACAGCAGTTTT 3920 Query 3830 TTAAATCCCATC-TCCAACTCGAAGAAGCGCTTCAGGTGCTTGAGCGTCGCGATCGGCAG 3888 ||||| ||||| |||| ||| |||||||| || |||||||| | |||| ||| ||||| Sbjct 3921 TTAAA-GCCATCTTCCAGCTCAAAGAAGCGTTTGAGGTGCTTTAAGGTCGGGATGGGCAG 3979 Query 3889 CGCGTGCGCTTCGTCGATCACGAGGCAATGCTGGTAGCCCGCCGC-GTGGCTTTCCTTCA 3947 || ||||| || ||||| || ||| ||| |||| ||| | ||| || || | Sbjct 3980 GCAATGGGCTTCTTCAATCACCAGTACATGGCTGTA-CCCGGCGCGGCTGCTCTCTTTTA 4038 Query 3948 GGGCCTTGTGGAGCTGCGCGAAGCGGGCTTCCGGGCTGCTCTTGACCTTCTCCAGCGGGG 4007 || ||| ||||| ||||||||||| || || |||| || ||||| |||| Sbjct 4039 ATACCCGGTGTAGCTGACGAAAGCGGGCTTCGGGTGAGCGTTTGAGTTTTTCCAGTGGGG 4098 Query 4008 CCACGG--CGGCCATGATTGCTTCCGCGA---TGTGCGTCGCCTTCAGCGTCTTGCCTTT 4062 | | || || || || || || |||| || ||| || ||||| |||||||| | Sbjct 4099 CTAGGGTATGGACA--ATAGCCTCGGCGAGACTG-GCG--GCTTTCAGGGTCTTGCCCTG 4153 Query 4063 CTGGTCGTTGTCCTCCATCGCCAGCACGTACGGCTTGATGACGATGATCGGATGACTCTC 4122 |||||||| |||||||| ||||||||||| || | || || | | ||| | || Sbjct 4154 ATGGTCGTTATCCTCCATGGCCAGCACGTAGGGTTCAATAACCACCACCGGGGCGTTTTC 4213 Query 4123 GCGCATCACGCGGTCTTCGAGGTCGCGCATCAGCGTCGTCTTGCCGCCGCCCGATTCCGC 4182 || | |||||| ||||| || |||| || | || || ||| |||||| | Sbjct 4214 CCGATAAATGCGGTCAGTCAGGTCACGTCTCAGGGTGCTTTTACCCGAGCCGGATTCCCC 4273 Query 4183 GACGACGGCCAGGAGCCCGCCATGCTTCGCAGTCTGGAACATTGCCTCGCGCACGTAGCG 4242 || || || | | ||||||| || |||||| ||| ||||||||||| || || Sbjct 4274 GATAACCGCGATAAAACCGCCATAGCGGGCGGTCTGGTACAACGCCTCGCGCACATAACG 4333 Query 4243 AATATCGGGGCTGACGAACATGTCTTCGTGCGACTG------GATGTCATCCGCGAACGG 4296 | | || ||| | | |||| ||||| || || | |||||| | ||||| Sbjct 4334 ACTTTCAGGGGTTAAAAACACATCTTCATGACCTTGTACCGCGTTGTCAT---CAAACGG 4390 Query 4297 GTCACGGAACAGGCCGAAGTGCTTACGGGTGGCTGGTGCGAGAACCTGTTTGCGCAGTAA 4356 | | || ||||| ||||| ||||| |||||| || | |||||||| ||||| Sbjct 4391 GGCGCGAAACAGCCCGAAATGCTTTTTGGTGGCAGGCAGTAATACCTGTTTTTTGAGTAA 4450 Query 4357 CATGGATTCCTCCTGGTTG 4375 ||||| ||||||| |||| Sbjct 4451 CATGGTGTCCTCCTCGTTG 4469 Score = 210 bits (232), Expect = 5e-50 Identities = 305/431 (71%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 24049 CCGGACATCCAGGCGATCATGGCCGAGCACAAGGCGCTCGGCATGATCGGCAAGGTCGAG 24108 ||||| || ||||| |||||| |||| |||||||||||| || | |||||| | ||| Sbjct 19664 CCGGAGATACAGGCCATCATGCAGGAGCGCAAGGCGCTCGGTCTGGTGGGCAAGATAGAG 19723 Query 24109 CTGCCGGGCGGCCTGGACAAGCTCGAAGGCGAGATCAAGTGGAACTCGCTCTACGCCGAC 24168 |||| ||| | ||||| || || || || |||||||||||| |||||||||| Sbjct 19724 TTGCCCTACGGTTTTGACAAACTGGAGGGAGAAATCAAGTGGAACAGTTTCTACGCCGAT 19783 Query 24169 GTGGCGAAGGCGATGGCGAACCCGTTCAAGGCCGTTCCGCTGCAATGCCGATCGAACATC 24228 || || | | | || |||||||| | || | |||||| ||||| | | | Sbjct 19784 GTTGCCCGGCTGGTAGCCAACCCGTTTAGCACCTACCAGCTGCAGTGCCGTTGCAGTGTT 19843 Query 24229 GAGACGTATGGCGCACAAGGCCGCGTGCGGGAAGTCAGTCTCGTGACGTACCTGACCGTG 24288 || || || | || || || | ||||| | ||||| || |||| ||| Sbjct 19844 CAGCAGTTTGCCAGCCAGGGTCGGTTCAATGAAGTGCCGATGGTGACCTATATGACGGTG 19903 Query 24289 ATGTTCAAGAAGAACCCGCTCGGTACGTACAAGCAACATGAGAACGCCGATTTCAGCTCC 24348 ||||| || ||||||||||| || || | |||||| |||||| | | ||||| ||| | Sbjct 19904 ATGTTTAAAAAGAACCCGCTGGGCACCTTCAAGCAGCATGAGGATCCGGATTTAAGCAGC 19963 Query 24349 GCGTTCGGCGCGACCTACATCAAGCAGGTCATCGACGGCGAGGAAGTGCTGGAGCTGGAC 24408 || || | ||||| ||||||||||| | || ||||| ||| | |||||||||||| Sbjct 19964 GCCTTTACCTGCACCTATATCAAGCAGGTGCTGGATGGCGAAGAATTACTGGAGCTGGAC 20023 Query 24409 TATCTGGCGAACATCTTCCGCGTCGGCGGCGAAGACATGCTGGCTGACTTCCGCGCCAAC 24468 || ||||||| || || ||||||||||| | || |||||||| |||| ||| ||||| Sbjct 20024 TACATGGCGAATATTTTTCGCGTCGGCGGGGTGGATATGCTGGCAGACTACCGAGCCAAT 20083 Query 24469 ATCGGCGGCTA 24479 || || || || Sbjct 20084 ATTGGTGGTTA 20094 Score = 190 bits (210), Expect = 5e-44 Identities = 337/486 (69%), Gaps = 14/486 (3%) Strand=Plus/Plus Query 17323 CTGCCGCCGAAGAAGGCG--ATCGAGTACTTGCGCAGCAAGGGCTACGAGATCACCTGGG 17380 ||||||||| | | ||| || | ||| | ||| |||||| || |||||||||| Sbjct 12863 CTGCCGCCG--GCACGCGCCATTGCCTACCTCCGCGCCAAGGGTTATCGCATCACCTGGG 12920 Query 17381 ATTGGGAGGAGCTTTGGCAGGACGCCCAGGCGAAGGCATTTACGGTTGCCAAGGTCACGC 17440 | ||||||| | | |||||||| || || || | || ||||| || || || || | || Sbjct 12921 ACTGGGAGGCGATGTGGCAGGAAGCGCATGCCCACGCCTTTACCGTGGCGAAAGTGATGC 12980 Query 17441 GCCTGGACATCCTGCAGGACATTCGCAACGCGGTCGAAACCGCAATCAGCGAAGGCAAGA 17500 |||| || || ||| |||| || ||| | || | |||| ||| | |||||||||| Sbjct 12981 GCCTCGATATTCTGGAGGATATCCGCCAGGCACTGGAAAACGCCCTGGCGGAAGGCAAGA 13040 Query 17501 CGTTGCGATGGTTCACGAAAGAGCTGACGCCCGTACTGCAATCCAAGGGCTGGTGGGG-- 17558 | || ||||| | || || || || ||| ||||||| ||||||| |||||||| Sbjct 13041 CCCAGCAGTGGTTTAAAAAGGAACTAACCCCCATACTGCAGGCCAAGGGATGGTGGGGGA 13100 Query 17559 AAAGCAGGAGCACGTCGACCAGGATACCGGCGA---AGTCAACCAGGTTCAGCTCGGCAG 17615 ||| | | ||| ||||| | || ||||| ||||| | || |||| ||||| Sbjct 13101 AAACCGATACCAC--CGACCCCGTCACGGGCGAGCCAGTCACC---GTCCAGCAGGGCAG 13155 Query 17616 CCCGTGGCGCCTGCAGACCATCTACCGAACGAACCTGCAGACGGCCTACATGGCGGGCCG 17675 ||||| ||| |||| || ||||| || || || | | ||||| || || || Sbjct 13156 TGACTGGCGGCTGGAGACGATTTACCGCACCAATCTCTCTATGCTCTACAGCGCCGGACG 13215 Query 17676 CTACGCCGAGCAAATGGCGAACGTCGACGATCGGCCGTACTGGATGTACGTGGCGATCCT 17735 || ||||| || ||| || |||| |||||||| ||||||||||||||||| |||| Sbjct 13216 CTGGGCCGAACAGCAGGCCAATATCGATGATCGGCCTTACTGGATGTACGTGGCCATCCG 13275 Query 17736 CGACAGCCGCACGCGCCCGAGCCATCGGGCAATGAACGGCAAGGTGTTCCGTTACGACGA 17795 || | || ||| ||| ||| |||| |||| || |||| ||| |||| || || Sbjct 13276 TGATAACCACACACGCAAGAGTCATCTGGCACTGCACGGATTGGTTTTCCCGGCGGATGA 13335 Query 17796 TCCGTT 17801 |||||| Sbjct 13336 TCCGTT 13341 Score = 181 bits (200), Expect = 2e-41 Identities = 512/769 (67%), Gaps = 32/769 (4%) Strand=Plus/Plus Query 16245 GTCGGCAAGCCGGCCGACTGGTT---CGTGTACGACCCGGAGAACCAGCTCCGCTTTCG- 16300 |||||||||||| | || ||||| | | | ||| | |||||||| |||||||| Sbjct 11782 GTCGGCAAGCCGCCGGAGTGGTTTAGCTTTGATGAC---GGCAACCAGCTGCGCTTTCGT 11838 Query 16301 --CAGCAAGGATCACTGGATGCAAGGTGAAGAGCTGCCGGCACGCAAGTTCCTGGTG-CC 16357 ||| ||| | || || |||||| |||| | |||||||| ||||| || Sbjct 11839 GCCAGACAGGC---CGGGCTGGTCGGTGAATTATTGCCCCCGCGCAAGTTTGTGGTGGCC 11895 Query 16358 GCGCCAGGAGGCGACGTATCTGAACCCGTACGGCTTTCCGGACCTGTCGATGTGCTTCTG 16417 ||| || | ||||| | | |||||| ||||||||||| |||||||||||||||||||| Sbjct 11896 ACGCAAG-ACGCGACCTTTGAGAACCCTTACGGCTTTCCCGACCTGTCGATGTGCTTCTG 11954 Query 16418 GCCGACGACGTTCAAGAAAGGCGGCCTCAAATTCTGGGTGCAGTTCACCGAGAAGTACGG 16477 |||| | |||| || || || ||| |||||| ||| || |||||||||||||| Sbjct 11955 GCCGGTGGCGTTTAAAAAGGGTGGCTGGCGTTTCTGGATGCGCTTTACCGAGAAGTACGG 12014 Query 16478 TTCGCCGATGCTGGTCGGCAAGCATCCGCGCAGCGCATCCGATGGCGAAAAGAACCTGCT 16537 || ||| || ||||| || || ||| || | | |||| |||| ||||||| Sbjct 12015 CAGCCCCTGGCTAGTTGGCAAACACCCACGCGGCACCGCTGATGCGGAAATCGACCTGCT 12074 Query 16538 GCTCGACTGCCTTGAGGACATGGTGCAGGATGCTGTCGCCGTGGTCCCGGACGATTCCAG 16597 |||||| | || || | |||||| | || || || | || | || | || |||| Sbjct 12075 GCTCGATTCGCTCGACAAGATGGTGGAAGACGCGGTGGTGGTTATTCCCAATGACTCCAC 12134 Query 16598 CATCGAGATTAAGGAAGCAGCCGGCAAGACCGGTAGCGCCGACGTCTACGAGCGCCTGCT 16657 | || || | ||| | || |||||| ||| | || || | | | |||| || Sbjct 12135 GGTAGAAATCATTGAATCGGCGGGCAAG---GGTGCCTCCAGCGACATCTATCGCCATCT 12191 Query 16658 GCACT--TCTGTCGCGGCGAGGTATCG--ATTGCCTTGCTCGGGCAGAACCAAACCACCG 16713 | | | ||| |||| | |||| |||||| |||| || || ||||| ||||||| Sbjct 12192 G-ATTGAACTGGCGCGCTCTGAAATCGTCATTGCCCTGCTGGGTCAAAACCAGACCACCG 12250 Query 16714 AGGCGACGTCGACGCGCGCGTCCGCGCAGGCCGGGCTTGAGGTGACGGACGACATTCGCG 16773 | ||| | | |||| ||| || ||||||||||| || || || | | || || |||| Sbjct 12251 AAGCGGAGACCACGCACGCCTCGGCGCAGGCCGGACTGGAAGTCGCCGCTGATATCCGCG 12310 Query 16774 ACGGCGACAAGGCGGTCGT-CTCCGAAGCGATGAACATGCTGATCCGCTGGATTTGCGAC 16832 | ||||| |||| | || | | | | || || | | | || | || || Sbjct 12311 ATGGCGATGCGGCGATGGTGATGAGTA-CCATCAATCAGGTACTGCGGTTTATGGTGGAG 12369 Query 16833 CTGAACTTCGACG--GCGCCGATCGACCCGTC-TTCGACATGTGGGAACAGGAACAGGTC 16889 || ||||||| | | |||||| || || | || |||||| || || | Sbjct 12370 CTTAACTTCGGTGAAGTGCCGAT---GCCTTCATGGGAGCTGTGGGCGCAAGAGACCATT 12426 Query 16890 GACGAGATCCAGGCCGGCCGCGACCAAAAGCTGACGCAAGCCGGCGCGCGT-TTCACGCC 16948 ||||||| ||||||| ||||| | ||| |||| || ||||| ||| || || || Sbjct 12427 GACGAGACCCAGGCCAAACGCGATTTGAGCCTGTCGCAGGCGGGCGC-CGTATTTACCCC 12485 Query 16949 GGCATATTTCAAGCGTGCGTACAACCTGCAGGATGGCGACCTGGACGAG 16997 | ||| || | ||||| |||||||||||| || |||||| |||| Sbjct 12486 GCAATACTTTATGCGTGAGTACAACCTGCAACCGGGAGACCTGCGCGAG 12534 Score = 125 bits (138), Expect = 2e-24 Identities = 534/827 (65%), Gaps = 25/827 (3%) Strand=Plus/Plus Query 5212 ACCACCTGGGCGGCATCGTCACGCCACGGATTGCGCGTGATCATCAGCTTCTCGCCGACC 5271 |||||||| || || ||||||||| || || ||| ||| | | ||||| || Sbjct 5244 ACCACCTGCGCCTCACTGTCACGCCAGGGGTTACGCACTATCTGTAAGGTGTCGCCCACG 5303 Query 5272 ATGACGCCCGGCACCGACGACACGTCGTATTC-CTCGCCACGGAACGACACGCGCAGCTT 5330 ||||| || || | || |||||||| ||| || | |||||||||||| || | Sbjct 5304 CAAACGCCGGGGACTTGCCGTACATCGTATTCACTCCCC-CTGAACGACACGCGAAGATA 5362 Query 5331 CGGCGTGACCTTCCGACTTTCCGGCGAGGCAACCGCCAATTCGCGGCACACATCGATCGA 5390 | | | ||||| || |||| |||| || |||| || || || || || | || Sbjct 5363 CTCCCTAACCTTACGGCTTTTCGGCTTACTCACTGCCAGCTCACGACAGACTTCAACGGA 5422 Query 5391 CGGCGCCTTGATGAGTTGCTGGGCGGTAATGCGCATCCATGCCTCACTACGCGTCGCACC 5450 ||| |||||||| | ||||| | ||| || || | ||| || | || ||| || Sbjct 5423 CGGTGCCTTGATTAACTGCTGCGGGGTGATCCGTAACCAGCAGTCGGTGCGGGTCATGCC 5482 Query 5451 ATGCCGGCTGTGCGTTTCAGTGGCGTTGAAGTGCATACGCCAGCGTTTCG--CAAGCGCG 5508 | || | ||| | | ||| ||| | | ||||||| || || ||| | Sbjct 5483 AGTACGCCGATGCAGTGCGGTGCGGTTATACTTTTTACGCCATAACC-CGACCAGGCG-G 5540 Query 5509 TTCAGCTCGTCGAGGCTGTTCACCGGCTGAAACTTGAGGCCCGGTTCGAACTTGCGCTCG 5568 || || || || | | | || || |||| | || | ||| || | || |||| Sbjct 5541 TTGAGTTCATCAATATTATCGACTTGCACAAACCGTAAACCTGATTCAAAATGGCACTCG 5600 Query 5569 ATGAGGTTCCGCGCGTTCTCAACCTGTCCGGTGGCACGGGCGTTGCCAACCTTGTGGACA 5628 | | || ||||| || || || |||||||| ||||| || || | || ||| | Sbjct 5601 AGAATGTCGCGCGCCTTTTCCACTGAGCCGGTGGCGCGGGCATTACCGGCTTTATGGGCG 5660 Query 5629 ATCAGCTCGATTCCGAGCGAGCGGCACAGGTTGCGCGTCATGGACGC--CGTGTTCGCCG 5686 || || | || || || | |||||||||||| | |||| | | ||| Sbjct 5661 ATAAGTTGAATACCAAGAGTTTTACACAGGTTGCGCAGGGTAGACGAGACCAGGGCGC-- 5718 Query 5687 ATCCGGCGTCGAGCATCA-GAATGCGTGGCACACCGTGCAGCAGGTCGGCCCCGCCGCGC 5745 | |||| |||| | || | | || || |||||||| ||||| | ||||||||| |||||| Sbjct 5719 AACCGGGGTCG-GTATAAAGGATACGCGGCACACCATGCAGAACGTCGGCCCCACCGCGC 5777 Query 5746 TCCTGCATAGCGTTGATGAGCG--TCGAGCAGAGGTTCTCGCCCGATTCCGCACCCATGA 5803 || ||||| || || | ||| ||| | | || || ||| | ||| | || | | Sbjct 5778 TCTTGCATGGCATTACTCAGCACATCG-GTAAAGTTTTGTGCC-GTTTCGCCCCCGAAGC 5835 Query 5804 CGTACTCGGTGTAAATCCAGTCGCTCGCGTGGTCGGAGATTTCGTAGCTCCACACACGAT 5863 ||| || | |||||||||| |||| | ||||||| | ||| | ||| || |||| Sbjct 5836 GGTATTCAGCGTAAATCCAGCCGCTGGTATGGTCGGTCAGTTCAAATGACCAGACGCGAT 5895 Query 5864 CGGCCGCGATCCGGGCGAGGTTCTTTGGCTTGTTCTTGTAGAACTCAGCGTGATCCATCA 5923 | | || ||||| || || || ||||||||||||| ||||| | | || ||||| Sbjct 5896 CATTGACAATACGGGCCAGATTTTTGGGCTTGTTCTTGTTAAACTCCACCTCATTCATCA 5955 Query 5924 CGCGCAGGCCG--TTCGCACGGGCATCGGC---TACCGG----CTTCAGGTAGTACAGCA 5974 ||||| |||| |||| | | || | | | | |||||||| || |||| Sbjct 5956 TGCGCAAGCCGCTATCGCGTGTGGTGCGCCCTTTGTCAGGATTTTTCAGGTAATAGAGCA 6015 Query 5975 CGCACAGGCTCGCGTCGATCTGCCACACGTGATTCGGATGCAGGCTT 6021 | ||||| ||| || | ||||| || ||||| || ||||||||| Sbjct 6016 CACACAGCGACGCATCCAGTTGCCAGACATGATTGGGGTGCAGGCTT 6062 Score = 116 bits (128), Expect = 9e-22 Identities = 141/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 31253 CACTGGCAAGACGCTGTATCCGGCGCAGGTCGAACGCGTCCTGGTCGACATCATTGCCTA 31312 || |||||||||||| ||||| ||||||| ||||| | ||| | || | ||||| || Sbjct 21655 CAGTGGCAAGACGCTCTATCCTGCGCAGGATGAACGGCTGCTGATTAACCTTATTGCTTA 21714 Query 31313 CCGTGAAACCCTCGTACGCGTCGGCATCCAGGAGGCCGCGAAACAGAACCTTGTCGCGTT 31372 |||||| | || |||||| | | |||||||| |||| | ||||| || || || || Sbjct 21715 CCGTGAGGCGCTGGTACGCCTGGCGATCCAGGATACCGCCGAGCAGAATCTGGTGGCCTT 21774 Query 31373 CGCCCGCGCTCCCATGATCGACTACCTTGGCGAGCTGGTCGGCGTGACGCGGCTGCCGGC 31432 |||||||| || ||| | ||||| || || || |||||||| || || ||| |||| Sbjct 21775 TGCCCGCGCCCCGATGCTGGACTATCTGGGTGAACTGGTCGGTGTATACCGCCTGTCGGC 21834 Query 31433 ----GCAGCCCG 31440 |||||||| Sbjct 21835 TGCGGCAGCCCG 21846 Score = 98.7 bits (108), Expect = 2e-16 Identities = 192/284 (68%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 18964 GCATACGATCCGAAAGTCCACGAAGCGCCGATCGTCATCGGCCATCCGCGCGACAACGCG 19023 || ||||||||| | ||||| || |||||||| | || |||||||| | ||| Sbjct 14468 GCTTACGATCCGTCGCTGCACGAGGCCCCGATCGTGGTTGGGCATCCGCGTACCGACGAC 14527 Query 19024 CCGGCGTGGGGCTGGGTCGCTTCTCTCTCGGCGTCGGCCGGCAACCTGCAGGCCGAACCC 19083 ||||| | |||||||| | || | || || | || | | ||| || || Sbjct 14528 CCGGCTTACGGCTGGGTAAAGTGCCTGGCCGCACAGGGGCGTGACGTACTGGCAGAGCCA 14587 Query 19084 ACCCAGGTCGATCCCGCATTCGCCGAACTCGTCGGCGCCGGGCGCTACAAGAAGATCAGC 19143 | | ||||| || || || || ||||| || | | | ||| | ||||||||| | Sbjct 14588 CACGAAGTCGACCCGGCGTTTGCTGAACTGGTGGCCAACAAGCGATTCAAGAAGATATCC 14647 Query 19144 GCCAGCTTCTACCACCCCGATTCGCCGCACAACCCGGTGCCGGGCGTGTACTACCTCCGT 19203 ||| ||||||| ||| ||||| || |||||| || ||| | || || || || Sbjct 14648 GCCTCCTTCTACACCCCGGATTCCCCCAGTAACCCGAAACCCGGCATCTATTATCTGCGC 14707 Query 19204 CACGTCGGGTTCCTCGGTGCGCAGCCGCCGGCCCTCAAGGGCCT 19247 || || || ||||| |||||||||||||| || |||||||||| Sbjct 14708 CATGTGGGATTCCTGGGTGCGCAGCCGCCCGCTATCAAGGGCCT 14751 Score = 98.7 bits (108), Expect = 2e-16 Identities = 179/257 (70%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 22526 GCAAACTATTTGCATGGCGTCGAGACCATTGAAAAGGAAACCGGCTCGCGGCCCGTCAAG 22585 || |||||||| || ||| || |||||||| || |||| | || || || Sbjct 18008 GCTAACTATTTACACGGCCCGGAAACCATTGAGGTTGAGCGCGGCCCCCGTCCGGTACGC 18067 Query 22586 GTCGTGAAGTCGGCGGTGATCGGCTTGATCGGCACCGCACCGATCGGGC-CGGTCAATAC 22644 | ||| || || ||||||| || |||| |||||||| |||| ||||| |||| ||| Sbjct 18068 GCCGTCAAATCATCGGTGATAGGACTGATAGGCACCGCCCCGA-CGGGCGCGGTGAATCA 18126 Query 22645 GCCGGTGCAGTCGCTGTCCGACGTCGACGCGGCGCAGTTCGGCCCGCAGCTCGCCGGCTT 22704 ||| ||| | ||||| || ||||| || ||||| |||||| | ||| ||| || Sbjct 18127 ACCGATGCCATGCCTGTCAGAAAAGGACGCCGCCCAGTTTGGCCCGGAAATCGACGGTTT 18186 Query 22705 CACGATCCCGCAAGCGCTCGACGCGGTCTACGACTACGGCAGCGGG-ACGGTGATCGTGA 22763 || || |||||||| || ||| | ||||| | || ||| || || ||| | || | Sbjct 18187 TACCATACCGCAAGCACTGCGGGCGATTTACGATCATGG-AGCAGGTACCGTGGTGGTTA 18245 Query 22764 TCAACGTGCTCGACCCG 22780 |||||||||| || ||| Sbjct 18246 TCAACGTGCTGGATCCG 18262 Score = 95.1 bits (104), Expect = 3e-15 Identities = 379/589 (64%), Gaps = 37/589 (6%) Strand=Plus/Plus Query 32404 GACATGTCGCCGCTCCTGGTCTACCTGATCGATGGCGTCGACGCATCCGCACTGCCGTTC 32463 ||| || ||||||| ||||| |||||||| ||| ||| | || | || | Sbjct 26861 GACCTGACGCCGCTGCTGGTTTACCTGATGGATATGACCGAAACCAGTGCCTTACCCTGG 26920 Query 32464 CTCGCAGACCAGTTTTCGGTGATGGGCGAGGACGGCTGGAGTCTCGCCGAGTCGGATGAG 32523 || || || || | ||| ||| ||||| | |||||| ||| ||||| || || || Sbjct 26921 CTGGCCGAACAACTGTCGCTGACCGGCGATAATGGCTGGCATCTGGCCGAATCCGACGAT 26980 Query 32524 GCCAAGCGTGCCTTGATCAAAGGGGCAATCGAGCTGCACCGCTACAAGGGCACGCCCTGG 32583 ||| || || || | ||| || || || ||||||||||| || ||||| |||||| Sbjct 26981 GCCCGCCGGGCGATGCTGAAAAACGCCATTGAACTGCACCGCTATAAAGGCACCCCCTGG 27040 Query 32584 GCGGTCAGAGAAGTGATTCGGCGCCTAGGCTTTGGCGAAGTTGAGCTTGTCG-AGGGCAT 32642 |||| | ||||| ||||| || || ||||| || || || || | || |||| | Sbjct 27041 TCGGTACGTGAAGTCATTCGCCGTCTGGGCTTCGGGGACGTCGAATTAAGCGAAGGGGA- 27099 Query 32643 CGGTGGCGCCTACTACGATGGGAAAAGCCGCCATGACAGCGTAATGGTGTATGGCGGCAA 32702 ||||| | |||||| || |||| |||| |||| || Sbjct 27100 -AGTGGC-------ATTGGGGGAAA-----CCCTGAC-CCGTA------CCTGGC--CAG 27137 Query 32703 TGGATTG----TGGGCGGCCTATCGGGTCATCCTGCTCGATCGCGCGATCACCAACGATC 32758 || || |||||| || ||||| | || | | || ||||| || | Sbjct 27138 CAGAATGCCGCTGGGCGCTTTACCGGGTGGTATTG---AAACAGATTATTACCAATGACC 27194 Query 32759 AAGCGGCGTTGCTGCGCACGACGTTGGCTGCGTTCGCGCCGGCTCGATGCGTACTCGCGA 32818 | ||||| || | ||| |||| |||| |||||||| ||||| || || | ||| ||| Sbjct 27195 AGGCGGCACTGTTACGCCAGACGCTGGCGGCGTTCGCCCCGGCCCGCTGTGAACTGGCGG 27254 Query 32819 GTCTCGA--ATACCGTCGTGTGCCGATGCGCTACAACGGCGCCGCCCACTATGACGGACA 32876 || || ||||| | || ||| | ||||| ||| | ||||||| ||||||||| Sbjct 27255 CGCTTGATTATACCACC--GTCCCGTTACGCTATAACCACACCGCCCAGTATGACGGAGT 27312 Query 32877 GTACAACCACGGGAGCAGTTA--ATGGGCAAACTCGTCGAATCTTCCCAATGGGAGGAAG 32934 || || || |||||||| || ||| | | | ||||| | |||||| || | Sbjct 27313 TTATAATCATGGGAGCAGCTAAGATGAGTTATTTAAAAGAATCCCCGGCATGGGAAGACG 27372 Query 32935 ATCTTTACCAAATCGAAACCGCCGATCCGGTCGAAGGTGGCCCGGACGG 32983 ||||||| || |||||| | || ||||| |||||||| || || Sbjct 27373 GCATTTACCAGATAGAAACCTCAGACCCGGTATTGGGTGGCCCAGAAGG 27421 >seq793 Length=2049 Score = 176 bits (194), Expect = 1e-39 Identities = 451/677 (67%), Gaps = 10/677 (1%) Strand=Plus/Minus Query 23246 GCGCAGGCGCTGGCCGGGCGCGGGCCGGCGGGCACGATCAACTTCAACACGTCCAGCGAC 23305 || ||||| | || || || ||||| ||| |||| || || || || || ||| Sbjct 2047 GCCCAGGCCATCGCTGGACGGGGGCCACAAGGCTCGATTAATTTTAATACCGCCTCTGAC 1988 Query 23306 CGCGTACGCCTCTGCTACCCGCACGTGAAGGTCTACGACACCGCGACCAACGCGGAACGC 23365 || |||||||| || || ||||| || |||||||| |||| || || ||| | | | Sbjct 1987 CGGGTACGCCTGTGTTATCCGCAGGTCAAGGTCTATGACAATGCAACAAACCAGACTCAC 1928 Query 23366 CTGGAGCCGCTCTCATCGCGTGCGGCGGGCCTTCGCGCACGTGTCGACCTGGACAAGGGC 23425 ||||||||||| || ||| |||||||| || | || || || | ||| || || Sbjct 1927 CTGGAGCCGCTGTCGGCGCACGCGGCGGGTCTGAGGGCCAAAGTGGATCGGGAAAAAGGG 1868 Query 23426 TACTGGTGGTCCAGCTCGAATCAGCAGCTCGTCGGCGTCACGGGCGTCGAGCGGCCGCTG 23485 | ||||||||| || |||||| ||| | || | || || ||||| ||| | Sbjct 1867 TTCTGGTGGTCGTCTTCCAATCAGGCGCTGATGGGTATTGTAGGGGTTGAGCGCCCGTTA 1808 Query 23486 TCGGCGATGATCGACGATCCGCAATCG-GACGTGAACATGCTCAACGAACAGGGCATCAC 23544 ||| || || || | |||| | || || || |||| ||| | | ||||| || Sbjct 1807 AGTGCGCGCATTGATGACGC-CAATAGCGAGGTCAATCTGCTTAACCAGAACGGCATTAC 1749 Query 23545 GACCGTGTTCAGCTCGTACGGCTCGGGCCTGCGCCTGTGGGGCAACCGCACGGCGGCATG 23604 || ||||| | | | || || | |||||||||||||||||||| ||||| || Sbjct 1748 CACGGTGTTTAACAGCTTTGGTAGCGGATTACGCCTGTGGGGCAACCGCACCGCGGCCTG 1689 Query 23605 GCCGACCGTGACGCACATGCGCAACTTCGAGAACGTGCGCCGTACGGGCGACGTCATCAA 23664 ||||||||||||||| || || || || || ||||| ||||| || ||| | || || Sbjct 1688 GCCGACCGTGACGCATCTGAAGAATTTTGAAAATGTGCGGCGTACCGGGGACATGATTAA 1629 Query 23665 CGAATCGCTGCGCTACTTCAGCCAGCAGTTCGTCGA-CGCGCCGATCGACCAAGGGCTGA 23723 || || | ||| | ||||| | ||| | | || ||| || || || ||||||| Sbjct 1628 TGAGTCTATCCGCCATTTCAGTCTGCAATATATTGATCGC-CCCATTAGTCAGGGGCTGA 1570 Query 23724 TCGACTCGCTCGTCGAGTCGGTGAACGGGTTCGGGCGCAAGCTGATCGGCGACGGCGCGC 23783 | || |||| ||| || || || || | || || |||||| | ||| || |||| Sbjct 1569 TTGATGCGCTGACCGAATCCGTCAATGGCTATGGCCGTCGGCTGATTGCCGATGGGGCGC 1510 Query 23784 TGCTCGG-CTTCAAGGCATGGTTCGATCCGGCCCGCAACCCGAAAGAGGAGCT--GGCGG 23840 |||| || |||| || |||| |||||||| |||| | | || | ||| | | | Sbjct 1509 TGCTGGGTTTTCACTGC-TGGTATGATCCGGCGAACAACACCAGGGATGCGCTCAGTCTG 1451 Query 23841 CCGGCCACCTGCTCATCAACTACAAGTACACGGTGCCGCCACCGCTCGAACGCCTGACGT 23900 || || || | || ||||| ||||| |||||| ||| | || | ||||| | Sbjct 1450 --GGGCAGTTGAAACTGAATTACAAATACACCCCGCCGCCGCCGATGGAGCATCTGACCT 1393 Query 23901 ACGAGACCGAGATCACC 23917 || || || |||||| Sbjct 1392 TTGAAACAGAAATCACC 1376 >seq550 Length=29371 Score = 105 bits (116), Expect = 2e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 17653 CAGACGGCCTACATGGCGGGCCGCTA-CGCCGAGCAAATGGCGAACGTCGACGATCGGCC 17711 ||| | ||||| ||||| || ||||| | || || | |||||||||| | ||||| Sbjct 14214 CAGTCTGCCTATATGGCCGGGCGCTATCAGCG-GCTGCGCGAGAACGTCGACCAGCGGCC 14156 Query 17712 GTACTGGATGTACGTGGCGATCCTCGACAGCCGCACGCGCCCGAGCCATCGGGCAATGAA 17771 |||||| ||| |||||| | | ||||||| ||| ||||| |||||| || || | Sbjct 14155 CTACTGGCAGTATGTGGCGGTGATGGACAGCCACACCCGCCCCAGCCATGCCGCGCTGCA 14096 Query 17772 CGGCAAGGTGTTCCGTTACGACGATCCGTTCTGGCAGTCGTTCTACCCGCCGAACGGCTG 17831 ||| |||||||||||| |||||| || |||| | | | | || |||||||||| Sbjct 14095 TGGCCGGGTGTTCCGTTATGACGATGCGGGCTGGGATACCCTGTTTCCCCCGAACGGCTA 14036 Query 17832 GGGCTGCCGGTGCCGCGTGGTGGCGCTGTCGCACGACGAG 17871 |||||| ||||| || ||||||| || |||| || Sbjct 14035 CAACTGCCGCTGCCGGGTACGGGCGCTGACGGCCGACCAG 13996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117469696888020