Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq54 190 2e-43 seq18 140 4e-28 >seq54 Length=1370671 Score = 190 bits (210), Expect = 2e-43 Identities = 418/615 (68%), Gaps = 20/615 (3%) Strand=Plus/Minus Query 6802 CGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGC 6861 || |||||||| ||| | | | || ||||||| | || ||||| | ||| || Sbjct 1327367 CGCGTTAATTGCTCTGTCAACGGTTGAATATGATTTTTGTATATATGGGTATCACCGGTT 1327308 Query 6862 GTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAAT 6921 || || | ||| || |||||||| | | || ||||| | | ||||| | Sbjct 1327307 GTGTGCACAAAGTCGCCTGGTTTAAGGCCGGTTAAATGTGCAATCATGTTCGTTAAGAGG 1327248 Query 6922 GCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT 6981 ||||| || |||| |||||| || ||||| || ||||||||||| | ||||||| | Sbjct 1327247 GCATACGAGGCTATATTAAAGGGGACACCCAAGCCCATATCTGCACTACGTTGATAAAGT 1327188 Query 6982 TGACAAGATAA---AATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGT 7038 || || | || | ||||| | | ||||||||||| ||| |||||| || ||| Sbjct 1327187 TGGCAGCACAATTCATTATTGGCCA---CATAAAATTGAGCCAAGCAATGACAGGGTGGT 1327131 Query 7039 AAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAA--ATACGTCTATCAT 7096 ||| | | |||||| |||||||||| | || ||| ||||||| ||| Sbjct 1327130 AAAGCCATTTTTGGTATATCTACCGGATTCCAAGAGG--ATAAAATCATACGTCGATCTG 1327073 Query 7097 TTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTC-A 7155 | |||||||| ||| | || | || || ||| |||||| || | |||| | | | | Sbjct 1327072 TAGGATTTGTCGTTATTGTTCTAATGATGTTTTTTAATTGGTCGAC-CCCTTCCGTACCA 1327014 Query 7156 TAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATA 7215 ||||| |||||| || |||| | ||||||||||||| ||| ||||| |||||||| Sbjct 1327013 TAATTTTCGTGACAAGTTCTATATTGCGCTCCAAAATGTCGCCACTGAAAACCATAAATG 1326954 Query 7216 GGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGAT--TTAAATTAGATTTTG 7273 || ||||| ||||||||||| |||| |||||| || ||| || ||||| | | Sbjct 1326953 GGTCCTAAGTCACCTTCTTCGCGATCATTAAAACCGCATCTATCCAAAAATTCGCGACT- 1326895 Query 7274 ATCCATAAGCATCCCAAATATGTACAGAttt-ttttG-ATAAATTTAAAGAATTTGTAGA 7331 | || | ||||||| ||||| | ||| ||||| | | ||| | || || Sbjct 1326894 -ACTATTACCATCCCATATATGGATGTTTTTATTTTGTAGCACTTT--GGCATCAGTGCT 1326838 Query 7332 TCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGT 7391 || | | |||||||| || |||||||||| |||||||||| | | |||| ||||| Sbjct 1326837 GCCGCTTATAAACCATAATAGCTCTTCTACTACAGCACGCCAAAATACTTTTTTCGTAGT 1326778 Query 7392 GAATAAAGGGAATGT 7406 | ||||||||||| Sbjct 1326777 AAGCAAAGGGAATGT 1326763 >seq18 Length=2944136 Score = 140 bits (154), Expect = 4e-28 Identities = 226/322 (70%), Gaps = 6/322 (2%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||||| ||||||| | || || | ||| |||||| | ||||||| Sbjct 566650 ATTGGGATTTTGGCAAAATGGGTATTGGCGGCTTGGATAAAGAATTCAATGCTATTTTCC 566591 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 | || || |||||||| ||| | ||||| ||| | | || |||| || || || | Sbjct 566590 GTCGTGCTTTTGCTTCAAGAGTATTTCCTCCGGAAGTGGTTGAACAATTGGGTTGCAAGC 566531 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | ||||| |||||| | ||||||||||||| |||||||| | ||||| || Sbjct 566530 ATGTCAAAGGTATTTTACTCTATGGACCTCCTGGCACAGGTAAAACTCTGATGGCACGTC 566471 Query 164573 GCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | ||| | | || ||| || || ||||| || ||||||||| | | | Sbjct 566470 AGATAGG-CAATATGCTGAACGCTCGTGAGCCA--AAAATAGTAAATGGTCCTCAGGTTT 566414 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | ||||||||||||| || || ||||||||| | ||| |||||| |||||||||| Sbjct 566413 TAGACAAATATGTAGGCGAATCGGAAGCTAATATAAGACGGTTGTTCGCTGAGGCTGAAG 566354 Query 164690 AAGAACAAAAGAAAGCAGGTTT 164711 ||||| |||| | || |||||| Sbjct 566353 AAGAAGAAAAAAGAGTAGGTTT 566332 Score = 111 bits (122), Expect = 2e-19 Identities = 262/396 (66%), Gaps = 20/396 (5%) Strand=Plus/Minus Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT--------- 164772 |||||| | ||| | || ||||| || |||||| |||||||| |||||| Sbjct 566263 TTACATATAATTATATTCGATGAAATTGATGCTATTTGCAAAGCGCGTGGTTCAGTAGCA 566204 Query 164773 GATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 | ||||| | | ||||| | || || ||||| || | ||||||| || || || Sbjct 566203 GGTAATAGTGGAGTCCATGACACTGTAGTGAATCAACTGTTGGCTAAAATTGACGGAGTG 566144 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 || ||||||||||||| | | |||||||| || || | || | |||||||| Sbjct 566143 GAGCAACTAAATAATATTTTGGTAATTGGTATGACAAATCGTCGCGACATGATTGATGAG 566084 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 ||||| ||||| ||||| || || ||| || |||| ||||| | || || || | Sbjct 566083 GCTTTGTTACGTCCTGGCCGCTTGGAAGTGCAAATGGAAATCAGTTTGCCTAACGAGCCT 566024 Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAAATCCTG----TGATATATT 165005 ||| | | |||||| |||| ||||| | ||| | | | || | ||| | | Sbjct 566023 GGAAGAGTACAAATTCTAAATATTCATACG----AAACGTATGCGTGATTTTAATAAAAT 565968 Query 165006 ATCTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGA 165065 || ||||| ||| ||| |||| ||| | || || |||| ||| || ||||| Sbjct 565967 CGCTGGGGATGTGGATACAAAAGAAATCGCTACTCTTACAAAGAATTTTAGCGGCGCTGA 565908 Query 165066 ATTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101 ||| || || |||||| | || || ||||| || || Sbjct 565907 ATTGGAAGGTTTAGTACGTGCTGCCCAATCTACTGC 565872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595859702691600