Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq167 116 2e-21 seq363 113 2e-20 seq158 109 3e-19 seq14 104 1e-17 >seq167 Length=572929 Score = 116 bits (128), Expect = 2e-21 Identities = 83/95 (87%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 29182 AAATGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 29241 Query 11513 AACTGAGCTAATGGGCCGTCGACGATTGTGATTTT 11547 |||||||||||||||||||| | ||| |||||| Sbjct 29242 AACTGAGCTAATGGGCCGTC--TGTTTGGGATTTT 29274 >seq363 Length=146782 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 15698 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 15639 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 15638 TGAGCTAATGGGCCGT 15623 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 15971 AAATGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 15912 Query 11513 AACTGAGCTAATGGGCCG 11530 |||||||||||||||||| Sbjct 15911 AACTGAGCTAATGGGCCG 15894 >seq158 Length=515793 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 230559 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 230618 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 230619 TGAGCTAATGGGCC 230632 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 232232 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 232291 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 232292 TGAGCTAATGGGCC 232305 >seq14 Length=3218856 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||||| Sbjct 2809629 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2809688 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2809689 TGAGCTAATGGGCC 2809702 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485938388476