Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq552 149 2e-31 >seq552 Length=31981 Score = 149 bits (164), Expect = 2e-31 Identities = 405/615 (66%), Gaps = 15/615 (2%) Strand=Plus/Plus Query 4682 GCGCGGGGAAAGCTTGGTGCCCAGTTCGGGCTGGCCGATCAGGATGATGCTGACCAGCTT 4741 |||| ||| | |||| |||||||||||| || || | ||||| |||| | ||| || Sbjct 3860 GCGCTCGGATAACTTGTCGCCCAGTTCGGGTTGTCCCAGCAGGACGATGGACAGCAGTTT 3919 Query 4742 GGTGAAGCCGTCCTCCAACTCACGCAGGCGCTTCAGGTGCTTGAGCGTGGCGATCGGCAG 4801 | ||||| || |||| |||| | ||| || |||||||| | || | ||| ||||| Sbjct 3920 TTTAAAGCCATCTTCCAGCTCAAAGAAGCGTTTGAGGTGCTTTAAGGTCGGGATGGGCAG 3979 Query 4802 GCTGTGTGCCTCCTCGATGATCAGAACGTGCTTGAAGCCGGCGGCATGGCTGACCTTCAA 4861 || || || || || || | ||| || || || | |||||| ||| | || || Sbjct 3980 GCAATGGGCTTCTTCAATCACCAGTACATGGCTGTACCCGGCGCGGCTGCTCTCTTTTAA 4039 Query 4862 GGCTCGGTGCAATTGCGCGAAGCGTGCCTCCGG-GCTCGATTTCGGCCGCTCCAGTGGCG 4920 | ||||| | || ||||| || || || | || ||| | |||||||| | Sbjct 4040 TACCCGGTGTAGCTGACGAAAGCGGGCTTCGGGTGAGCG-TTTGAGTTTTTCCAGTGGGG 4098 Query 4921 CAACCGCAGCCATCATGGCTTCGGCAATGTGGGTGACACGCAAGGTCTTGCCCT--TGGT 4978 | | | | | || || ||||| | || | | || ||||||||||| ||| Sbjct 4099 CTAGGGTATGGACAATAGCCTCGGCGAGACTGGCGGCTTTCAGGGTCTTGCCCTGATGG- 4157 Query 4979 ATCGCTGTCCTCCATGGCCAGGACGTAGGGCTCGATAGGGATCACTGGAGCATTCTCGGT 5038 ||| | |||||||||||||| |||||||| || ||| | ||| || || || || Sbjct 4158 -TCGTTATCCTCCATGGCCAGCACGTAGGGTTCAATAACCACCACCGGGGCGTTTTCCCG 4216 Query 5039 GTTCAGGCGGTGCACCAGATCGCGGCGCAGGGTGGATTTACCGGCGCCGGACTCACCCAC 5098 | | ||||| ||| || || | ||||||| |||||| | |||||| || || | Sbjct 4217 ATAAATGCGGTCAGTCAGGTCACGTCTCAGGGTGCTTTTACCCGAGCCGGATTCCCCGAT 4276 Query 5099 CACCGCAAGAAAGCCGTCATGTCGGGCGACGTGATACATCGCCTCGCGGACGTAGCGAAT 5158 ||||| | ||| ||| ||| |||||| || |||| ||||||||| || || ||| | Sbjct 4277 AACCGCGATAAAACCGCCATAGCGGGCGGTCTGGTACAACGCCTCGCGCACATAACGACT 4336 Query 5159 GTCGGGGCTGACGTACATGTCGTCAGCGCTCTGCAGC------TCTTCGAAGGGGTCACG 5212 || ||| | | ||| || ||| | || | | || || || ||| | || Sbjct 4337 TTCAGGGGTTAAAAACACATCTTCATGACCTTGTACCGCGTTGTCATCAAACGGGGCGCG 4396 Query 5213 ACGGATGTCGAAAGCCTTCTTCGTCGCTGGTAGCAGTACCTGTTTGTTCATTACCATGGG 5272 | | ||||| ||| || || || || || | ||||||||| || | || ||||| Sbjct 4397 AAACAGCCCGAAATGCTTTTTGGTGGCAGGCAGTAATACCTGTTTTTTGAGTAACATGGT 4456 Query 5273 GTCGCACTCCTCGTT 5287 ||| ||||||||| Sbjct 4457 GTC---CTCCTCGTT 4468 Score = 132 bits (146), Expect = 1e-26 Identities = 260/382 (68%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 7785 CATGCGCTCGATGTCGTCTAG-GTCGAGGCCTGCAACTGTGCCTCCATCGGCAAGTGCAA 7843 |||||| || | || || || ||| || || ||| ||||| || ||||| ||| | Sbjct 6975 CATGCGATCAACCTCATCGAGCGTCAAG-CCAACAATGGTGCCGCCTTCGGCGAGTTCGG 7033 Query 7844 CGAGATCGTCATCATCTTCGCTGATCAGTTCGAGTAGCTTCGCCTTCCCCAAAACGGACA 7903 | ||||| || ||| ||| | | |||| || | || || || || || | | ||| | Sbjct 7034 CCAGATCTTCGTCACCTTGGGTCATCAACTCAAAGAGTTTTGCTTTTCCAAGACCGGCAA 7093 Query 7904 ACGTTGTCCGTTTTGACTCCAGTGCAGGAGACAGGTATTTGAGCGCCGCCTGCATCATCC 7963 |||| ||||| |||||| | | ||| || |||||| | || || ||||| ||| Sbjct 7094 ACGTCTGCCGTTGTGACTCTAATCTAGGTGATGTGTATTTTATGGCGGCTTGCATAATCA 7153 Query 7964 GGCGCGCTGCGCGCTCATGTATCCCCAACTGTTCAGTGACGATCTGAGTGAAGTCGCCGT 8023 ||||||| | ||| | || || ||||| || || |||| || || || |||| Sbjct 7154 AACGCGCTGTTCTATCAGCAAGTCCTAATTGTTCCGTTACAATCTTTGTAAACTCACCGT 7213 Query 8024 GGGGCTCATGCTCTTTCAGCACGATCAGGCGCTTTCCGGCTTCCAGCATGGCTTCTGCCG 8083 ||||||| |||||| | | || || || || || || |||||||||||||| || Sbjct 7214 ATGGCTCATTCTCTTTAATAATAATTAGCCGTTTCCCCGCCTCCAGCATGGCTTCCGCGC 7273 Query 8084 ACTGGGCCATGTAGAAGCGCGCCTCATTGACCACGCGGATGCGGTCGTAAGGGAGGCCGT 8143 ||| ||||| ||||||||||| |||| || | | || || || || || || | Sbjct 7274 TCTGCGCCATATAGAAGCGCGCTTCATGCACAATTCTCTCCCGTTCATAGGGTAGCCCAT 7333 Query 8144 CGCCGAACTGCGCCATGACCTC 8165 | || || ||||||| ||||| Sbjct 7334 CCCCAAAACGCGCCATCACCTC 7355 Score = 132 bits (146), Expect = 1e-26 Identities = 227/327 (69%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 7785 CATGCGCTCGATGTCGTCTAG-GTCGAGGCCTGCAACTGTGCCTCCATCGGCAAGTGCAA 7843 |||||| |||| || || || ||| ||||| ||| ||||| || || || ||| | Sbjct 8722 CATGCGGTCGACCTCATCGAGCGTC-AGGCCAACAATGGTGCCGCCTTCAGCGAGTTCCG 8664 Query 7844 CGAGATCGTCATCATCTTCGCTGATCAGTTCGAGTAGCTTCGCCTTCCCCAAAACGGACA 7903 | ||||| || ||||||| | | |||| || | || || || || || | | ||| | Sbjct 8663 CCAGATCTTCGTCATCTTGGGTCATCAACTCAAAGAGTTTTGCTTTTCCAAGACCGGCAA 8604 Query 7904 ACGTTGTCCGTTTTGACTCCAGTGCAGGAGACAGGTATTTGAGCGCCGCCTGCATCATCC 7963 |||| ||||| |||||| | | ||| || |||||| | || || ||||| ||| Sbjct 8603 ACGTCTGCCGTTGTGACTCTAATCTAGGTGATGTGTATTTTATGGCGGCTTGCATAATCA 8544 Query 7964 GGCGCGCTGCGCGCTCATGTATCCCCAACTGTTCAGTGACGATCTGAGTGAAGTCGCCGT 8023 ||||||| | ||| | || || ||||| || || |||| || || || |||| Sbjct 8543 AACGCGCTGTTCTATCAGCAAGTCCTAATTGTTCCGTTACAATCTTTGTAAACTCACCGT 8484 Query 8024 GGGGCTCATGCTCTTTCAGCACGATCAGGCGCTTTCCGGCTTCCAGCATGGCTTCTGCCG 8083 ||||||| |||||| | | || || || || || || |||||||||||||| || Sbjct 8483 ATGGCTCATTCTCTTTAATAATAATTAGCCGTTTCCCCGCCTCCAGCATGGCTTCCGCGC 8424 Query 8084 ACTGGGCCATGTAGAAGCGCGCCTCAT 8110 ||| ||||| |||||||| || |||| Sbjct 8423 TCTGCGCCATATAGAAGCGGGCTTCAT 8397 Score = 105 bits (116), Expect = 2e-18 Identities = 220/326 (67%), Gaps = 9/326 (3%) Strand=Plus/Plus Query 6563 AGGATGCGTGGCACGCCGTGGAGCATGTCGGCTCCACCACGCTCTTGCATGGCCTCGATC 6622 ||||| || ||||| || || || | |||||| ||||| |||||||||||||| | || Sbjct 5736 AGGATACGCGGCACACCATGCAGAACGTCGGCCCCACCGCGCTCTTGCATGGCATTACTC 5795 Query 6623 AGCACCGTGCAGAAGTTCTCGCCACTCTCGGCGCCCATCACATAGCGAACGTAGATCCAG 6682 ||||| | ||||| | | | ||| | || | || | |||| |||||| Sbjct 5796 AGCACATCGGTAAAGTTTTGTGCCGTTTCGCCCCCGAAGCGGTATTCAGCGTAAATCCAG 5855 Query 6683 CCGGTGTAGTGATCGGTGATCTCGTAGGACCACACACGGTCAGCGGCCACGCGATCCAGG 6742 ||| || || ||||| | || | ||||| || || ||| | | | || |||| Sbjct 5856 CCGCTGGTATGGTCGGTCAGTTCAAATGACCAGACGCGATCATTGACAATACGGGCCAGA 5915 Query 6743 TTCGCTGGCTTGTTCTTGTAGAACTCCTTGCGATCCATCACCTGTAGGCCGCTAGC-CTT 6801 || ||||||||||||| |||||| || ||||| | | ||||||| | | | Sbjct 5916 TTTTTGGGCTTGTTCTTGTTAAACTCCACCTCATTCATCATGCGCAAGCCGCTATCGCGT 5975 Query 6802 CTTGTTCGCCC-----CAGG---CTTCAGGTAGTAGAGGACGCAGAGGGACGCATCGATC 6853 | || ||||| |||| |||||||| ||||| || || || |||||||| | Sbjct 5976 GTGGTGCGCCCTTTGTCAGGATTTTTCAGGTAATAGAGCACACACAGCGACGCATCCAGT 6035 Query 6854 TGCCAGACGTGGTTCGGATGCAGGCT 6879 |||||||| || || || |||||||| Sbjct 6036 TGCCAGACATGATTGGGGTGCAGGCT 6061 Score = 91.5 bits (100), Expect = 4e-14 Identities = 197/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 26297 ACCCGGCCGGAAACGCTGACCGACATCCAGCGCGCCGCGCGCTTTTACTACCTGCAGCAG 26356 |||| | | || || | ||||| ||||||||||| || || || || |||||||| | Sbjct 9775 ACCCCGACCGAGACCTTAACCGATATCCAGCGCGCGGCCCGTTTCTATTACCTGCAAAAA 9716 Query 26357 AGCGCGTTCGGCGGCCGGGTCGATGGCCAGAGCTACGGAACCGCCACCACCTCACCGCCT 26416 |||||||||||| ||| | | || | || || | |||||| | |||| Sbjct 9715 CAGGCGTTCGGCGGCAAGGTGGCGGAGCACACCTTTGGCGTGACGACCACCACTGCGCCA 9656 Query 26417 GGGCTCAACCTGTTGCGCCTGGAAGAAACACTGTCGGCGGCTCACCTGCGGCTGAGCA-A 26475 | || |||||||||||| |||||||| ||||||| |||||| |||| | | | || Sbjct 9655 CGCCTGAACCTGTTGCGCATGGAAGAAGAACTGTCGTTGGCTCATCTGC-GATTATCACG 9597 Query 26476 TACCTACATCGAGCACCTCAGCTGG--CAGGACTGCCTCCGGCGCTATGATCGAGAGCAC 26533 ||| ||| || || || ||| ||| ||| | |||||||| || ||| Sbjct 9596 CACCACCATTGAACAACTTGATTGGGCCAG--CTGTATTGCTCGCTATGACCGTCCGCAT 9539 Query 26534 ACCCTCTTTTATATGGACCCGCCGTACTGGGAGACGGAGGGCTATGGCGT 26583 || || || || || || ||||| |||| || |||||||||||||| Sbjct 9538 ACGCTGTTCTACTGCGATCCCCCGTATTGGGGCACCGAGGGCTATGGCGT 9489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122880790798062