Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq53 159 3e-34 seq1 122 8e-23 >seq53 Length=1361919 Score = 159 bits (176), Expect = 3e-34 Identities = 186/249 (75%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 94764 TTTTAA--AAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || ||| || | | ||||||||||| ||||| |||||||||| Sbjct 1240235 TTTTAACAAATATTTGCATTCCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCT 1240176 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| || || ||||| | |||| | || || | ||||| || |||| || | Sbjct 1240175 TTTGTACATTGTAATCCGAAAGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCA 1240116 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | |||||||||||||||||||||||||| || | ||||||||| || ||| ||| Sbjct 1240115 AACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGA 1240056 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 ||| || | | || || || | || |||||||||||||| | |||||| ||||||| Sbjct 1240055 TAGTATCCGATGGTTCTACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGA 1239996 Query 95001 TCTGCATGC 95009 ||||||||| Sbjct 1239995 TCTGCATGC 1239987 Score = 134 bits (148), Expect = 1e-26 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||||||||| |||||||| ||||| || || | || || || | || || || Sbjct 1240431 CGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCG--AGAGAGTACGAC 1240374 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 || ||||||||||| || ||||||| || | ||||| ||||||||||||||||||| Sbjct 1240373 CGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTT 1240314 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | |||||||||||| ||| ||| ||| || | | || || || | || | Sbjct 1240313 TATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAA 1240254 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| ||||| | |||||| ||||| || ||||| Sbjct 1240253 TGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||| |||||||| ||||| || || | || ||||| | |||| Sbjct 1241549 CGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACCG 1241490 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || | ||||| || ||||||| || | |||||||||||||||||||||||||| Sbjct 1241489 TCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTA 1241430 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||||||| || ||| ||| ||| || | | || || || | || ||| Sbjct 1241429 TCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAATG 1241370 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||| ||||| | |||||| |||||||| ||||| Sbjct 1241369 GATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 109 bits (120), Expect = 5e-19 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | || || | ||||||||||| || ||||| ||||| | Sbjct 1232583 AAAAATTTGCATGCCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTAT 1232524 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || ||||| || ||| ||| ||||| ||||| || ||||||| || | || Sbjct 1232523 ATTGTAATCAGACAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTG 1232464 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||| |||||||||||||||||||| | || ||||| || || | | || || Sbjct 1232463 CTGATCGGGAGGAATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATTGTATC 1232404 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || | ||||| ||||| ||||| | || || || ||||| ||||| Sbjct 1232403 AGATGGTTCCACTTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCAT 1232344 Query 95008 GCTTACAA 95015 ||| || Sbjct 1232343 TTTTAGAA 1232336 Score = 109 bits (120), Expect = 5e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 || |||| | || || | || || || ||||| || | |||||| |||||||| | || Sbjct 1234473 AAGTTTAAATACCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGT 1234414 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 |||||||| | ||| | ||| |||| ||||| || | ||||| || | |||| Sbjct 1234413 TATAATCGGAGAGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCT 1234354 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 | ||||| ||||||||||| || || | || || || |||||| | | || || | Sbjct 1234353 GGTCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGG 1234294 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | ||||||||||| || || | |||||| || ||||| ||||| Sbjct 1234293 AAGGCTCGACTTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||| |||||||| || ||||| || ||||| || || | ||| ||||| Sbjct 1239987 CCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAG 1239928 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||| |||| ||||| || | ||||| || | ||||| ||||| ||| Sbjct 1239927 AGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 1239868 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | || || || || ||| | |||||||| | | || || Sbjct 1239867 ATACCTTCCTTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACC 1239808 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || |||||||| ||||| | |||||| ||||| || ||||| Sbjct 1239807 TCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | ||| ||||| ||||| ||||| |||||||||||||| | Sbjct 1239772 AAAAATTTGCATACCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTAT 1239713 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || ||||| || ||| || || |||||||| || | || ||||| | ||| Sbjct 1239712 ATTGTAATCAGACAATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTG 1239653 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||||| || || ||||| || || | ||| || || || || | | ||| || Sbjct 1239652 TTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATC 1239593 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | |||| ||||| ||||| | || ||||| ||||||||||| Sbjct 1239592 GGAAGGCTCAACCTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | ||| || || ||||| ||||| |||||||||||||| | Sbjct 1232810 AAAATTTGCATACCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATA 1232751 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| || ||| || || | |||||| || | |||||||| | || Sbjct 1232750 TTGTAATCAGACAATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGT 1232691 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| || || ||||| || || | ||| || ||||| || | | ||| || Sbjct 1232690 TGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCG 1232631 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | || || || | ||||| ||||| ||||| | || || ||||| || |||||| Sbjct 1232630 GAAGGCTCAACCTCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCATG 1232571 Query 95009 C 95009 | Sbjct 1232570 C 1232570 >seq1 Length=10097680 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||| || | ||||| ||||| || ||||| || || | || ||||| | Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||| ||||| || | ||||| || | |||||||||||||||| Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | |||||| |||||||| | | |||||| | | || || Sbjct 7547495 ATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 7547436 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || ||||| |||||||||||||| || || || ||||| Sbjct 7547435 TCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 7547389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281948390360